Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g079970.2.1 | Tomato | nucleus | 99.13 | 99.13 |
| KRH21650 | Soybean | cytosol, nucleus, plastid | 43.04 | 68.75 |
| KRH10681 | Soybean | nucleus | 26.09 | 65.93 |
| KRH10685 | Soybean | nucleus | 55.22 | 59.91 |
| PGSC0003DMT400049592 | Potato | nucleus | 59.13 | 58.37 |
| PGSC0003DMT400037405 | Potato | nucleus | 56.09 | 55.84 |
| VIT_00s0532g00050.t01 | Wine grape | nucleus | 61.74 | 53.99 |
| PGSC0003DMT400067294 | Potato | nucleus | 50.87 | 47.95 |
| PGSC0003DMT400044234 | Potato | nucleus | 37.39 | 38.05 |
| PGSC0003DMT400004039 | Potato | nucleus | 26.96 | 18.56 |
Protein Annotations
| EntrezGene:102602930 | MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| UniProt:M1BYR3 | PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400021717 | PGSC:PGSC0003DMG400021717 | EnsemblPlants:PGSC0003DMT400055907 | PFscan:PS50888 |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF78 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000294E20F | RefSeq:XP_006365882.1 |
| InterPro:bHLH_dom | : | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021717]
Coordinates
chr2:+:35674850..35678258
Molecular Weight (calculated)
25779.7 Da
IEP (calculated)
6.055
GRAVY (calculated)
-0.786
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETEEDGSN WLIELGLMED LPSLEPNAQW PSNAFSIPNN LSSGLEDSYG NSDSLKECGS KKRVRSGACA SDSKAHREKM RRDKLNDRFQ ELSSILEPGK
101: QPKMDKSVIL GDAVRMVVQL RDEAQKLKES NNNLQEKVIE LKAEKNELRD EKQKLKAEKD KLEQHLKAMN TQPGFLPHPP AMPSPFSAPH QVFASKMMPY
201: LGYPGIPMWQ FVPPAAVDTS EDHSLRPPVA
101: QPKMDKSVIL GDAVRMVVQL RDEAQKLKES NNNLQEKVIE LKAEKNELRD EKQKLKAEKD KLEQHLKAMN TQPGFLPHPP AMPSPFSAPH QVFASKMMPY
201: LGYPGIPMWQ FVPPAAVDTS EDHSLRPPVA
001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVRIG SYIWRSCYGC VITQLVFRCS CCDRDIGLLH KSILCFFFCL RFAYVPLFPK EVDESRSLPI
101: AKGSVEVDGF LCDADVIKEP SSRKRIKTES CTGSNSKACR EKQRRDRLND KFTELSSVLE PGRTPKTDKV AIINDAIRMV NQARDEAQKL KDLNSSLQEK
201: IKELKDEKNE LRDEKQKLKV EKERIDQQLK AIKTQPQPQP CFLPNPQTLS QAQAPGSKLV PFTTYPGFAM WQFMPPAAVD TSQDHVLRPP VA
101: AKGSVEVDGF LCDADVIKEP SSRKRIKTES CTGSNSKACR EKQRRDRLND KFTELSSVLE PGRTPKTDKV AIINDAIRMV NQARDEAQKL KDLNSSLQEK
201: IKELKDEKNE LRDEKQKLKV EKERIDQQLK AIKTQPQPQP CFLPNPQTLS QAQAPGSKLV PFTTYPGFAM WQFMPPAAVD TSQDHVLRPP VA
Arabidopsis Description
bHLH115Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7Z3]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.