Factsheet for PGSC0003DMT400049592

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038368
PGSC0003DMT400043197

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54680.1	PGSC0003DMT400038368	AT1G32230.1	19548978
AT5G54680.1	PGSC0003DMT400043197	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064040.2.1	Tomato	nucleus	97.0	97.0
VIT_19s0014g05100.t01	Wine grape	nucleus	79.83	78.48
PGSC0003DMT400037405	Potato	nucleus	76.82	77.49
KRH55616	Soybean	cytosol, nucleus, plastid	76.39	75.42
KRH25888	Soybean	cytosol, nucleus, plastid	73.82	72.88
KRH27110	Soybean	nucleus	72.1	72.1
KRH22229	Soybean	nucleus	72.1	71.79
AT5G54680.1	Thale cress	nucleus	71.67	71.37
Bra022738.1-P	Field mustard	nucleus	70.82	70.21
CDY28758	Canola	nucleus	70.82	70.21
CDY42475	Canola	nucleus	69.96	69.96
Bra002964.1-P	Field mustard	nucleus	69.53	69.53
CDY41004	Canola	nucleus	69.53	68.94
CDY47456	Canola	nucleus	67.81	67.81
Bra030459.1-P	Field mustard	nucleus	63.95	66.22
CDY71937	Canola	cytosol, nucleus	62.23	66.21
CDY43028	Canola	nucleus	66.95	65.55
Bra029011.1-P	Field mustard	nucleus	66.09	64.71
CDY43809	Canola	nucleus	66.09	64.71
CDY35576	Canola	nucleus	62.66	64.04
PGSC0003DMT400055907	Potato	nucleus	58.37	59.13
PGSC0003DMT400067294	Potato	nucleus	57.94	55.33
AT1G51070.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	61.8	49.32
PGSC0003DMT400044234	Potato	nucleus	41.63	42.92
PGSC0003DMT400004039	Potato	nucleus	29.18	20.36

Protein Annotations

EntrezGene:102603905	MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:M1BP01	PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400019263	PGSC:PGSC0003DMG400019263	EnsemblPlants:PGSC0003DMT400049592	PFscan:PS50888
PANTHER:PTHR23042	PANTHER:PTHR23042:SF78	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001FD2095	RefSeq:XP_006360098.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

Basic helix-loop-helix protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019263]

Coordinates

chr7:+:54219288..54223538

Molecular Weight (calculated)

25866.6 Da

IEP (calculated)

8.192

GRAVY (calculated)

-0.692

Length

233 amino acids

Sequence
(BLAST)

001: MVSPENTNWL YDYGFEDSSV PDSNFSASAS GFNWPVQNLN GSRNVSSEID GSIGESDYPK ESGSKKRARV ESCAPTSSKA CREKLRRDKL NDKFMELGAL
101: LEPGRPPKTD KSAILVDAVR MVTQLRDEAQ KLKDSNLNLQ EKIKELKVEK TELRDEKQRL KAEKEKLEQQ LKTTSAQPSF LPPAIPSAFA AHGQFPGSKL
201: VPIMSYPGVA MWQFMPPAAV DTSQDHVLRP PVA

Best Arabidopsis Sequence Match ( AT5G54680.1 )
(BLAST)

001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA

Arabidopsis Description

ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.