Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g052670.2.1 | Tomato | nucleus | 95.9 | 95.9 |
| VIT_12s0059g02650.t01 | Wine grape | nucleus | 65.98 | 67.08 |
| PGSC0003DMT400049592 | Potato | nucleus | 55.33 | 57.94 |
| KRH26841 | Soybean | nucleus | 51.23 | 55.8 |
| KRH22510 | Soybean | nucleus | 52.46 | 55.41 |
| PGSC0003DMT400037405 | Potato | nucleus | 52.05 | 54.98 |
| PGSC0003DMT400055907 | Potato | nucleus | 47.95 | 50.87 |
| PGSC0003DMT400044234 | Potato | nucleus | 41.39 | 44.69 |
| PGSC0003DMT400004039 | Potato | nucleus | 27.87 | 20.36 |
Protein Annotations
| EntrezGene:102584888 | MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| UniProt:M1CH14 | PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400026168 | PGSC:PGSC0003DMG400026168 | EnsemblPlants:PGSC0003DMT400067294 | PFscan:PS50888 |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF78 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000296A96E | RefSeq:XP_006360579.1 |
| RefSeq:XP_006360580.1 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026168]
Coordinates
chr7:-:47307006..47311535
Molecular Weight (calculated)
27498.5 Da
IEP (calculated)
5.521
GRAVY (calculated)
-0.611
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVDSSGNPN WLFDYELITD ITSAASVTVT DFQSPATIDF SWPAQTIYAS SNLIAETDYT FADSEVSKEA SSRKRLKSEW CSSPRSKACR EKLRRDRLNE
101: RFLELSSVLD PGRPPKTEKV AILSDAQRML IELRTETQKL KESNEELQEK IKELKAEKNE LRDEKRRLKE EKENLEQQVK SLASKPGFLS HPSAVGAAFT
201: AQGQVAAGNK LMPFIGYPSV AMWQFMQPAV VDTSQDHVLR PPVA
101: RFLELSSVLD PGRPPKTEKV AILSDAQRML IELRTETQKL KESNEELQEK IKELKAEKNE LRDEKRRLKE EKENLEQQVK SLASKPGFLS HPSAVGAAFT
201: AQGQVAAGNK LMPFIGYPSV AMWQFMQPAV VDTSQDHVLR PPVA
001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
Arabidopsis Description
ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.