Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_19s0014g05100.t01 | Wine grape | nucleus | 73.33 | 74.26 |
| PGSC0003DMT400067294 | Potato | nucleus | 67.08 | 65.98 |
| Solyc07g052670.2.1 | Tomato | nucleus | 67.08 | 65.98 |
| KRH26841 | Soybean | nucleus | 58.33 | 62.5 |
| KRH22510 | Soybean | nucleus | 60.0 | 62.34 |
| VIT_00s0532g00050.t01 | Wine grape | nucleus | 65.83 | 60.08 |
| VIT_05s0049g00460.t01 | Wine grape | cytosol, nucleus, plasma membrane | 45.42 | 50.23 |
| VIT_14s0081g00720.t01 | Wine grape | nucleus | 44.58 | 49.54 |
| VIT_03s0038g01790.t01 | Wine grape | nucleus | 32.5 | 23.71 |
| VIT_04s0023g03430.t01 | Wine grape | nucleus | 32.08 | 23.62 |
Protein Annotations
| EntrezGene:100251621 | wikigene:100251621 | MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | ProteinID:CCB52066 |
| ProteinID:CCB52066.1 | ncoils:Coil | UniProt:F6HIM0 | EMBL:FN595765 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100251621 |
| wikigene:LOC100251621 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF78 | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:TC63155 | UniParc:UPI0002107F90 | ArrayExpress:VIT_12s0059g02650 | EnsemblPlantsGene:VIT_12s0059g02650 | EnsemblPlants:VIT_12s0059g02650.t01 |
| RefSeq:XP_002274829 | RefSeq:XP_002274829.2 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chr12:-:7357750..7361057
Molecular Weight (calculated)
26391.4 Da
IEP (calculated)
7.443
GRAVY (calculated)
-0.634
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MALDSSENSN WLFDYGLMED ITVPGGEFPE PTPGTGFSWP SQALKSSSSV SLEADCSFGD SDGLKELGPR KRLKHESCGA TGTKACREKL RRDRLNERFL
101: ELGSILEPGR PPKTDKAAIL SDAVRMVTQL RSEAQKLKES NGDLQEKIKE LKAEKNELRD EKQRLKAEKE KLEQQVKAIS AQPGFLPHPS AMPAAFAAQG
201: RAPGNKLMPF IGYPSVAMWQ FMPPAAVDTS QDHVLRPPVA
101: ELGSILEPGR PPKTDKAAIL SDAVRMVTQL RSEAQKLKES NGDLQEKIKE LKAEKNELRD EKQRLKAEKE KLEQQVKAIS AQPGFLPHPS AMPAAFAAQG
201: RAPGNKLMPF IGYPSVAMWQ FMPPAAVDTS QDHVLRPPVA
001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
Arabidopsis Description
ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.