Factsheet for VIT_03s0038g01790.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13089	Soybean	nucleus	56.53	66.19
KRH24147	Soybean	nucleus	54.41	65.09
PGSC0003DMT400004039	Potato	nucleus	61.7	60.78
KRH43415	Soybean	nucleus	52.28	60.78
Bra011658.1-P	Field mustard	cytosol	15.5	60.71
Solyc01g111130.2.1	Tomato	nucleus	61.4	60.66
VIT_04s0023g03430.t01	Wine grape	nucleus	59.57	60.12
EES03283	Sorghum	nucleus	48.33	50.32
Zm00001d044216_P002	Maize	nucleus, plastid	47.11	49.05
Os02t0433600-01	Rice	nucleus	50.15	48.1
TraesCS6A01G204300.1	Wheat	nucleus	45.9	46.75
TraesCS6B01G220300.1	Wheat	nucleus	42.25	46.64
CDX72574	Canola	nucleus	34.04	45.71
Bra017745.1-P	Field mustard	nucleus	33.43	44.9
TraesCS6D01G185100.1	Wheat	cytosol	42.55	43.34
CDY47051	Canola	nucleus	32.22	43.27
CDY68426	Canola	nucleus	31.61	40.94
AT4G36060.3	Thale cress	nucleus, plastid	30.4	34.84
VIT_19s0014g05100.t01	Wine grape	nucleus	23.71	32.91
VIT_12s0059g02650.t01	Wine grape	nucleus	23.71	32.5
VIT_14s0081g00720.t01	Wine grape	nucleus	20.36	31.02
VIT_00s0532g00050.t01	Wine grape	nucleus	22.8	28.52
VIT_05s0049g00460.t01	Wine grape	cytosol, nucleus, plasma membrane	18.24	27.65

Protein Annotations

EntrezGene:100257183	wikigene:100257183	MapMan:15.5.32	MapMan:25.4.1.4	Gene3D:4.10.280.10	EMBL:AM459590
ProteinID:CAN74571	ProteinID:CAN74571.1	ProteinID:CBI37922	ProteinID:CBI37922.3	ncoils:Coil	UniProt:D7U5A3
EMBL:FN596508	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0006511	GO:GO:0006810	GO:GO:0006890
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	GO:GO:0043565	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EntrezGene:LOC100257183	wikigene:LOC100257183	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR23042
PANTHER:PTHR23042:SF59	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00015C8EA6	ArrayExpress:VIT_03s0038g01790	EnsemblPlantsGene:VIT_03s0038g01790
EnsemblPlants:VIT_03s0038g01790.t01	unigene:Vvi.22531	RefSeq:XP_002277206	RefSeq:XP_002277206.2	InterPro:bHLH_dom	SEG:seg

Description

No Description!

Coordinates

chr3:-:1252286..1255340

Molecular Weight (calculated)

36267.8 Da

IEP (calculated)

6.270

GRAVY (calculated)

-1.000

Length

329 amino acids

Sequence
(BLAST)

001: MDHQNPEAFC QSTHYPPPDP RVSSTRSHPD SSKRSEGEFK DFVTARKVQK ADREKLRRDR LNEQFIELGN ALDPDRPKND KATILSDTIQ LLKDLTAQVE
101: KLKAENASLN EESRELTQEK NDLREEKASL KSATENLNVQ YQQRLRAMFP WSAIDPSVVV SPPSYPFPVP VPVPIPTGSI PMHPSMQPYP FFGSQNTGII
201: PNPCSTFVPY FTPNTLIEPQ STQHVSPPMQ PGSTSNISSK QDSKNESPGE SKSEKGEDST DVATDLQLKT PGSKSDQEVS SGQQQHKPKR SLSKEKNSTE
301: GSSSSRCSSS PSVQDSSSNS VVGGRKADD

Best Arabidopsis Sequence Match ( AT3G19860.1 )
(BLAST)

001: MDVSARKSQK AGREKLRREK LNEHFVELGN VLDPERPKND KATILTDTVQ LLKELTSEVN KLKSEYTALT DESRELTQEK NDLREEKTSL KSDIENLNLQ
101: YQQRLRSMSP WGAAMDHTVM MAPPPSFPYP MPIAMPPGSI PMHPSMPSYT YFGNQNPSMI PAPCPTYMPY MPPNTVVEQQ SVHIPQNPGN RSREPRAKVS
201: RESRSEKAED SNEVATQLEL KTPGSTSDKD TLQRPEKTKR CKRNNNNNSI EESSHSSKCS SSPSVRDHSS SSSVAGGQKP DDAK

Arabidopsis Description

BHLH121Transcription factor bHLH121 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT23]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.