CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47051	Canola	nucleus	94.69	94.69
CDY68426	Canola	nucleus	74.29	71.65
AT4G36060.3	Thale cress	nucleus, plastid	57.96	49.48
KRH13089	Soybean	nucleus	44.9	39.15
KRH24147	Soybean	nucleus	43.27	38.55
KRH43415	Soybean	nucleus	42.86	37.1
Solyc01g111130.2.1	Tomato	nucleus	46.53	34.23
PGSC0003DMT400004039	Potato	nucleus	46.53	34.13
VIT_03s0038g01790.t01	Wine grape	nucleus	45.71	34.04
EES03283	Sorghum	nucleus	43.67	33.86
Zm00001d044216_P002	Maize	nucleus, plastid	42.04	32.59
CDY42214	Canola	mitochondrion, nucleus	42.45	31.14
TraesCS6A01G204300.1	Wheat	nucleus	38.78	29.41
TraesCS6B01G220300.1	Wheat	nucleus	35.51	29.19
CDY33424	Canola	nucleus	43.27	29.04
Os02t0433600-01	Rice	nucleus	40.41	28.86
TraesCS6D01G185100.1	Wheat	cytosol	36.33	27.55
CDY71937	Canola	cytosol, nucleus	20.82	23.29
CDY35576	Canola	nucleus	21.63	23.25
CDY43028	Canola	nucleus	22.45	23.11
CDY47456	Canola	nucleus	21.63	22.75
CDY42475	Canola	nucleus	21.63	22.75
CDY43809	Canola	nucleus	22.04	22.69
CDY28758	Canola	nucleus	21.22	22.13
CDY41004	Canola	nucleus	20.82	21.7
CDY49420	Canola	nucleus	21.22	18.64
CDY12770	Canola	nucleus	20.82	17.96
CDX77539	Canola	nucleus	21.22	17.93
CDY35510	Canola	nucleus	20.82	17.35
CDY08983	Canola	nucleus	20.41	16.89
CDX85069	Canola	nucleus	20.41	16.34

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.4	Gene3D:4.10.280.10	GO:A0A078C8T7	EnsemblPlants:CDX72574	ProteinID:CDX72574
ProteinID:CDX72574.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00100112001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR23042	PANTHER:PTHR23042:SF73	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EC5004	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

BnaC07g45960D

Coordinates

chrLK031796:+:1908885..1910279

Molecular Weight (calculated)

27270.1 Da

IEP (calculated)

5.775

GRAVY (calculated)

-0.675

Length

245 amino acids

Sequence
(BLAST)

001: MEQTKKLKTS SEFSLSDESS ASSSSIRPEK MVEVKKEPVS SLKKADRERI RRDKLNEQFL ELGNALDPNR PKSDKASILI DTIQTLKDLM TQVDRLKAEH
101: VTLSQESREL IQEKSELREE KTSLKSDIDI LNAQYQHKVR TMVPWIPHYT YPVPLVAITQ GPVSTLPFPL YATQNPAPLP SPCSTFMPYS AEQKDDAGLE
201: LELKIHASSS DQEDVSGKEK KGNSAITASS SNSYSSSQAV SDSVL

Best Arabidopsis Sequence Match ( AT4G36060.2 )
(BLAST)

001: MAVSCLFIVS SNYRGAEMVV EVKKEAVCSQ KAEREKLRRD KLKEQFLELG NALDPNRPKS DKASVLTDTI QMLKDVMNQV DRLKAEYETL SQESRELIQE
101: KSELREEKAT LKSDIEILNA QYQHRIKTMV PWVPHYSYHI PFVAITQGQS SFIPYSASVN PLTEQQASVQ QHSSSSADAS MKQDSKIKPL DLDLMMNSNH
201: SGQGNDQKDD VRLKLELKIH ASSLAQQDVS GKEKKVSLTT TASSSNSYSL SQAVQDSSPG TVNDMLKP

Arabidopsis Description

bHLH11basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT4G36060]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.