Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54680.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT5G54680.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT5G54680.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT5G54680.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT5G54680.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029011.1-P | Field mustard | nucleus | 99.16 | 99.16 |
| CDY43809 | Canola | nucleus | 93.7 | 93.7 |
| AT5G54680.1 | Thale cress | nucleus | 90.34 | 91.88 |
| CDY42475 | Canola | nucleus | 89.5 | 91.42 |
| CDY41004 | Canola | nucleus | 89.08 | 90.21 |
| CDY28758 | Canola | nucleus | 88.24 | 89.36 |
| CDY47456 | Canola | nucleus | 87.39 | 89.27 |
| KRH27110 | Soybean | nucleus | 68.91 | 70.39 |
| KRH22229 | Soybean | nucleus | 68.49 | 69.66 |
| VIT_19s0014g05100.t01 | Wine grape | nucleus | 68.91 | 69.2 |
| KRH55616 | Soybean | cytosol, nucleus, plastid | 68.49 | 69.07 |
| PGSC0003DMT400049592 | Potato | nucleus | 65.55 | 66.95 |
| KRH25888 | Soybean | cytosol, nucleus, plastid | 66.39 | 66.95 |
| Solyc07g064040.2.1 | Tomato | nucleus | 63.87 | 65.24 |
| Solyc10g006510.2.1 | Tomato | nucleus | 63.03 | 64.94 |
| PGSC0003DMT400037405 | Potato | nucleus | 62.6 | 64.5 |
| CDY71937 | Canola | cytosol, nucleus | 58.4 | 63.47 |
| CDY35576 | Canola | nucleus | 58.82 | 61.4 |
| CDY49420 | Canola | nucleus | 39.92 | 34.05 |
| CDY12770 | Canola | nucleus | 39.92 | 33.45 |
| CDX77539 | Canola | nucleus | 39.5 | 32.41 |
| CDY08983 | Canola | nucleus | 38.66 | 31.08 |
| CDY35510 | Canola | nucleus | 37.82 | 30.61 |
| CDX85069 | Canola | nucleus | 39.08 | 30.39 |
| CDX72574 | Canola | nucleus | 23.11 | 22.45 |
| CDY47051 | Canola | nucleus | 22.27 | 21.63 |
| CDY42214 | Canola | mitochondrion, nucleus | 29.83 | 21.26 |
| CDY68426 | Canola | nucleus | 21.85 | 20.47 |
| CDY33424 | Canola | nucleus | 31.09 | 20.27 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | GO:A0A078I1U4 | UniProt:A0A078I1U4 | EnsemblPlants:CDY43028 |
| ProteinID:CDY43028 | ProteinID:CDY43028.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00075853001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF78 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EECAA9 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaA03g11750DBnaA03g11750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1U4]
Coordinates
chrLK032543:-:77537..79254
Molecular Weight (calculated)
26161.3 Da
IEP (calculated)
8.846
GRAVY (calculated)
-0.571
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSPENGNWI CDLIEADYGG SFTIQAPAFS WPLHQPIGVS SHNSSVGVDG SAGISEASKD PPLSRKRVRC ESSSATSSKA CREKQRRDRL NDKFMELGVI
101: LEPGHPPKTD KAAILVDALR MVTQLRGEAQ KLKDSNSSLH DKIKELKTEK NELRDEKQRL KTEKEKLELQ LKAMNAPPQP SFFPAPPMMP TAFASAQGQA
201: PGNKMVPFIS YPGVAMWQFM PPASVDTSQD HVLRPPVA
101: LEPGHPPKTD KAAILVDALR MVTQLRGEAQ KLKDSNSSLH DKIKELKTEK NELRDEKQRL KTEKEKLELQ LKAMNAPPQP SFFPAPPMMP TAFASAQGQA
201: PGNKMVPFIS YPGVAMWQFM PPASVDTSQD HVLRPPVA
001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVSVE VDGFLCDADV IKEPSSRKRI KTESCTGSNS KACREKQRRD RLNDKFTELS SVLEPGRTPK
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA
Arabidopsis Description
bHLH115Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7Z3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.