CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22597
CDY41739
CDY43007
CDY60257
CDY67026

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54680.1	CDY22597	AT1G32230.1	19548978
AT5G54680.1	CDY41739	AT1G32230.1	19548978
AT5G54680.1	CDY43007	AT1G32230.1	19548978
AT5G54680.1	CDY60257	AT1G32230.1	19548978
AT5G54680.1	CDY67026	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28758	Canola	nucleus	97.45	97.45
AT5G54680.1	Thale cress	nucleus	95.32	95.73
CDY42475	Canola	nucleus	93.62	94.42
CDY47456	Canola	nucleus	92.34	93.13
CDY43809	Canola	nucleus	90.64	89.5
CDY43028	Canola	nucleus	90.21	89.08
VIT_19s0014g05100.t01	Wine grape	nucleus	71.91	71.31
KRH55616	Soybean	cytosol, nucleus, plastid	70.64	70.34
PGSC0003DMT400049592	Potato	nucleus	68.94	69.53
KRH27110	Soybean	nucleus	68.51	69.1
KRH22229	Soybean	nucleus	68.51	68.8
KRH25888	Soybean	cytosol, nucleus, plastid	68.51	68.22
Solyc07g064040.2.1	Tomato	nucleus	67.23	67.81
Solyc10g006510.2.1	Tomato	nucleus	65.96	67.1
PGSC0003DMT400037405	Potato	nucleus	65.11	66.23
CDY71937	Canola	cytosol, nucleus	60.85	65.3
CDY35576	Canola	nucleus	61.28	63.16
CDY49420	Canola	nucleus	41.7	35.13
CDY12770	Canola	nucleus	41.7	34.51
CDX77539	Canola	nucleus	41.28	33.45
CDY08983	Canola	nucleus	39.57	31.42
CDX85069	Canola	nucleus	40.85	31.37
CDY35510	Canola	nucleus	38.72	30.95
CDX72574	Canola	nucleus	21.7	20.82
CDY42214	Canola	mitochondrion, nucleus	29.36	20.66
CDY47051	Canola	nucleus	20.85	20.0
CDY68426	Canola	nucleus	21.28	19.68
CDY33424	Canola	nucleus	30.21	19.45

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	GO:A0A078HUH5	UniProt:A0A078HUH5	EnsemblPlants:CDY41004
ProteinID:CDY41004	ProteinID:CDY41004.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00072291001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF78	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EDD0AE
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BnaA02g27940DBnaA02g27940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUH5]

Coordinates

chrLK032487:+:262268..264431

Molecular Weight (calculated)

25747.5 Da

IEP (calculated)

9.128

GRAVY (calculated)

-0.678

Length

235 amino acids

Sequence
(BLAST)

001: MVSPENANWI SDLIDADYGS FTIQGPGFSW PVHQPIAVSS NSSAGVDGSA GNSETSKEPG SKKRARCESS SATSSKACRE KQRRDRLNDK FMELSVILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DTNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFT SAAQGQAPGN
201: KMVPFISYPG VAMWQFMPPA SVDTSQDHVL RPPVA

Best Arabidopsis Sequence Match ( AT5G54680.1 )
(BLAST)

001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA

Arabidopsis Description

ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.