Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54680.1 | KRH39574 | AT1G32230.1 | 19548978 |
| AT5G54680.1 | KRH74370 | AT1G32230.1 | 19548978 |
| AT5G54680.1 | KRH74373 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27110 | Soybean | nucleus | 93.16 | 93.56 |
| KRH55616 | Soybean | cytosol, nucleus, plastid | 79.91 | 79.24 |
| KRH25888 | Soybean | cytosol, nucleus, plastid | 79.91 | 79.24 |
| VIT_19s0014g05100.t01 | Wine grape | nucleus | 79.91 | 78.9 |
| PGSC0003DMT400049592 | Potato | nucleus | 71.79 | 72.1 |
| Solyc07g064040.2.1 | Tomato | nucleus | 70.09 | 70.39 |
| PGSC0003DMT400037405 | Potato | nucleus | 68.8 | 69.7 |
| AT5G54680.1 | Thale cress | nucleus | 69.66 | 69.66 |
| CDY42475 | Canola | nucleus | 68.8 | 69.1 |
| CDY47456 | Canola | nucleus | 68.8 | 69.1 |
| Bra002964.1-P | Field mustard | nucleus | 68.38 | 68.67 |
| Bra022738.1-P | Field mustard | nucleus | 68.8 | 68.51 |
| CDY28758 | Canola | nucleus | 68.8 | 68.51 |
| CDY41004 | Canola | nucleus | 68.8 | 68.51 |
| CDY43028 | Canola | nucleus | 69.66 | 68.49 |
| Solyc10g006510.2.1 | Tomato | nucleus | 67.52 | 68.4 |
| KRH21650 | Soybean | cytosol, nucleus, plastid | 41.88 | 68.06 |
| Bra029011.1-P | Field mustard | nucleus | 68.8 | 67.65 |
| CDY71937 | Canola | cytosol, nucleus | 61.97 | 66.21 |
| CDY43809 | Canola | nucleus | 67.09 | 65.97 |
| Bra030459.1-P | Field mustard | nucleus | 63.25 | 65.78 |
| CDY35576 | Canola | nucleus | 62.39 | 64.04 |
| KRH10685 | Soybean | nucleus | 56.41 | 62.26 |
| KRH10681 | Soybean | nucleus | 23.5 | 60.44 |
| KRH26841 | Soybean | nucleus | 55.13 | 57.59 |
| KRH22510 | Soybean | nucleus | 55.98 | 56.71 |
| AT1G51070.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 62.82 | 50.34 |
| KRG90395 | Soybean | cytosol, mitochondrion, nucleus | 44.87 | 47.73 |
| KRH31712 | Soybean | cytosol, mitochondrion, nucleus | 44.02 | 47.25 |
| KRH24147 | Soybean | nucleus | 29.91 | 25.45 |
| KRH13089 | Soybean | nucleus | 29.49 | 24.56 |
| KRH43415 | Soybean | nucleus | 29.49 | 24.38 |
| KRH49674 | Soybean | nucleus, plastid | 30.77 | 21.88 |
Protein Annotations
| EntrezGene:100801742 | MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | EMBL:ACUP02008395 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_13G286700 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| UniProt:I1M3H9 | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlants:KRH22229 | ProteinID:KRH22229 | ProteinID:KRH22229.1 |
| EMBL:KT031121 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF78 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0001B36BCD | InterPro:bHLH_dom | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr13:+:38721818..38724420
Molecular Weight (calculated)
25629.5 Da
IEP (calculated)
7.364
GRAVY (calculated)
-0.515
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSPENSNWL FDYPLIDDDV IPVGDSSFAV SASTFSWPPP PANVSVEIDA SLGDSDGLKN PALKKRTKSD SSTASSSKAC REKLRRDRLN DKFVELGSIL
101: EPGRPPKTDK ASILIDAARM VTQLRDEALK LKDSNTSLQE KIKELKAEKN ELRDEKQRLK AEKEKLEVQV KSMNAQPAFL PPPPAIPAAF APQGQAPGNK
201: LVPFISYPGV AMWQFMPPAA VDTSQDHVLR PPVA
101: EPGRPPKTDK ASILIDAARM VTQLRDEALK LKDSNTSLQE KIKELKAEKN ELRDEKQRLK AEKEKLEVQV KSMNAQPAFL PPPPAIPAAF APQGQAPGNK
201: LVPFISYPGV AMWQFMPPAA VDTSQDHVLR PPVA
001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVSVE VDGFLCDADV IKEPSSRKRI KTESCTGSNS KACREKQRRD RLNDKFTELS SVLEPGRTPK
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA
Arabidopsis Description
bHLH115Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7Z3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.