Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH22510 | Soybean | nucleus | 94.64 | 91.77 |
| VIT_12s0059g02650.t01 | Wine grape | nucleus | 62.5 | 58.33 |
| KRH21650 | Soybean | cytosol, nucleus, plastid | 36.61 | 56.94 |
| KRH55616 | Soybean | cytosol, nucleus, plastid | 58.93 | 55.93 |
| KRH22229 | Soybean | nucleus | 57.59 | 55.13 |
| KRH27110 | Soybean | nucleus | 57.14 | 54.94 |
| KRH10685 | Soybean | nucleus | 51.79 | 54.72 |
| KRH25888 | Soybean | cytosol, nucleus, plastid | 57.59 | 54.66 |
| KRH10681 | Soybean | nucleus | 20.98 | 51.65 |
| PGSC0003DMT400067294 | Potato | nucleus | 55.8 | 51.23 |
| Solyc07g052670.2.1 | Tomato | nucleus | 54.91 | 50.41 |
| KRG90395 | Soybean | cytosol, mitochondrion, nucleus | 41.96 | 42.73 |
| KRH31712 | Soybean | cytosol, mitochondrion, nucleus | 40.18 | 41.28 |
| KRH24147 | Soybean | nucleus | 23.21 | 18.91 |
| KRH43415 | Soybean | nucleus | 21.88 | 17.31 |
| KRH13089 | Soybean | nucleus | 21.43 | 17.08 |
| KRH49674 | Soybean | nucleus, plastid | 23.66 | 16.11 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | UniProt:A0A0R0HGH7 | EMBL:ACUP02007750 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_12G196700 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlants:KRH26841 | ProteinID:KRH26841 | ProteinID:KRH26841.1 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF78 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0006EDDDBE |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr12:-:35760113..35762006
Molecular Weight (calculated)
25022.7 Da
IEP (calculated)
5.916
GRAVY (calculated)
-0.668
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMNSSGGAC GWLYDYGFDI PVAGSDFMAS DSGGFSWGPQ SYNFKGPSNM SLEMEYSLDS TVMENGPSKR LRTESCASGS KACREKLRRD KLNERFLELS
101: SILEPGRQPK TDKVALLSDA ARVVIQLRNE AERLKEMNDE LQGEKNELRD EKNRLKEEKE KLEKQVKLTN IQPSFLPQAP DAKGQVGSHK LIPFIGYPGI
201: AMWQFMSPAA VDTSKDHLLR PPVA
101: SILEPGRQPK TDKVALLSDA ARVVIQLRNE AERLKEMNDE LQGEKNELRD EKNRLKEEKE KLEKQVKLTN IQPSFLPQAP DAKGQVGSHK LIPFIGYPGI
201: AMWQFMSPAA VDTSKDHLLR PPVA
001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVSVE VDGFLCDADV IKEPSSRKRI KTESCTGSNS KACREKQRRD RLNDKFTELS SVLEPGRTPK
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA
Arabidopsis Description
bHLH115Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7Z3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.