Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH31712 | Soybean | cytosol, mitochondrion, nucleus | 92.27 | 93.12 |
| Solyc09g089870.2.1 | Tomato | nucleus | 62.27 | 60.62 |
| PGSC0003DMT400044234 | Potato | nucleus | 61.36 | 59.73 |
| VIT_05s0049g00460.t01 | Wine grape | cytosol, nucleus, plasma membrane | 58.64 | 59.45 |
| Bra023751.1-P | Field mustard | nucleus | 41.36 | 58.33 |
| KRH21650 | Soybean | cytosol, nucleus, plastid | 31.82 | 48.61 |
| KRH10681 | Soybean | nucleus | 20.0 | 48.35 |
| GSMUA_Achr10P... | Banana | cytosol | 31.82 | 48.28 |
| KRH55616 | Soybean | cytosol, nucleus, plastid | 50.45 | 47.03 |
| KRH25888 | Soybean | cytosol, nucleus, plastid | 49.55 | 46.19 |
| KRH27110 | Soybean | nucleus | 48.64 | 45.92 |
| CDY49420 | Canola | nucleus | 57.27 | 45.16 |
| KRH22229 | Soybean | nucleus | 47.73 | 44.87 |
| KRH10685 | Soybean | nucleus | 43.18 | 44.81 |
| GSMUA_Achr7P10830_001 | Banana | cytosol, nucleus, plastid | 29.09 | 44.76 |
| AT4G14410.1 | Thale cress | nucleus | 57.27 | 44.52 |
| Bra041033.1-P | Field mustard | nucleus | 57.27 | 44.21 |
| CDY12770 | Canola | nucleus | 56.82 | 44.01 |
| Os05t0455400-01 | Rice | cytosol | 29.55 | 43.92 |
| TraesCS1A01G281300.1 | Wheat | cytosol, mitochondrion, nucleus | 46.36 | 42.5 |
| EES18337 | Sorghum | nucleus | 46.36 | 42.32 |
| TraesCS1B01G290500.1 | Wheat | cytosol | 46.36 | 42.15 |
| KRH26841 | Soybean | nucleus | 42.73 | 41.96 |
| TraesCS1D01G280600.1 | Wheat | cytosol, mitochondrion, nucleus | 45.91 | 41.91 |
| GSMUA_Achr10P... | Banana | plastid | 34.55 | 41.76 |
| HORVU1Hr1G072810.2 | Barley | nucleus | 44.55 | 41.18 |
| KRH22510 | Soybean | nucleus | 42.73 | 40.69 |
| CDX77539 | Canola | nucleus | 52.73 | 40.0 |
| Bra014923.1-P | Field mustard | nucleus | 52.73 | 40.0 |
| GSMUA_Achr2P16550_001 | Banana | cytosol | 41.82 | 40.0 |
| CDY35510 | Canola | nucleus | 51.36 | 38.44 |
| CDY08983 | Canola | nucleus | 50.45 | 37.5 |
| CDX85069 | Canola | nucleus | 50.91 | 36.6 |
| AT3G23210.1 | Thale cress | nucleus | 53.18 | 36.56 |
| Zm00001d038357_P001 | Maize | cytosol, nucleus, plastid | 45.45 | 35.09 |
| KRH24147 | Soybean | nucleus | 25.91 | 20.73 |
| KRH43415 | Soybean | nucleus | 25.91 | 20.14 |
| KRH13089 | Soybean | nucleus | 25.45 | 19.93 |
| KRH49674 | Soybean | nucleus, plastid | 25.45 | 17.02 |
Protein Annotations
| EntrezGene:100787583 | MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | EMBL:ACUP02012610 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_20G088600 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| UniProt:I1NER6 | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlants:KRG90395 | ProteinID:KRG90395 | ProteinID:KRG90395.1 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF72 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0001E243E8 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr20:-:32983161..32988628
Molecular Weight (calculated)
24771.4 Da
IEP (calculated)
5.922
GRAVY (calculated)
-0.625
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSLEDSGCW DFLDYSFIDQ APPDFLWSNN NNSVSTEIDI PGDAVACQEN TKKRGRTDSC FKAGSKACRE KLRRERLNER FCDLSSVLEP GRPVRTDKPA
101: ILDDAIRVLS QLKTEAQELK KTNEKLLEEI KCLKAEKNEL REEKLVLKAD KERIEKQLKA LPVAPAGFMA PPVAAAAAAY QAGVNKMAVY PNYGYIPMWQ
201: YLPQSVRDTS HDHELRPPAA
101: ILDDAIRVLS QLKTEAQELK KTNEKLLEEI KCLKAEKNEL REEKLVLKAD KERIEKQLKA LPVAPAGFMA PPVAAAAAAY QAGVNKMAVY PNYGYIPMWQ
201: YLPQSVRDTS HDHELRPPAA
001: MDVNLFGHDD SCSNGAELDD YTQFGVNLQT DQEDTFPDFV SYGVNLQQEP DEVFSIGASQ LDLSSYNGVL SLEPEQVGQQ DCEVVQEEEV EINSGSSGGA
101: VKEEQEHLDD DCSRKRARTG SCSRGGGTKA CRERLRREKL NERFMDLSSV LEPGRTPKTD KPAILDDAIR ILNQLRDEAL KLEETNQKLL EEIKSLKAEK
201: NELREEKLVL KADKEKTEQQ LKSMTAPSSG FIPHIPAAFN HNKMAVYPSY GYMPMWHYMP QSVRDTSRDQ ELRPPAA
101: VKEEQEHLDD DCSRKRARTG SCSRGGGTKA CRERLRREKL NERFMDLSSV LEPGRTPKTD KPAILDDAIR ILNQLRDEAL KLEETNQKLL EEIKSLKAEK
201: NELREEKLVL KADKEKTEQQ LKSMTAPSSG FIPHIPAAFN HNKMAVYPSY GYMPMWHYMP QSVRDTSRDQ ELRPPAA
Arabidopsis Description
BHLH104Transcription factor bHLH104 [Source:UniProtKB/Swiss-Prot;Acc:Q8L467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.