Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54680.1 | KRH39574 | AT1G32230.1 | 19548978 |
| AT5G54680.1 | KRH74370 | AT1G32230.1 | 19548978 |
| AT5G54680.1 | KRH74373 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH55616 | Soybean | cytosol, nucleus, plastid | 94.92 | 94.92 |
| VIT_19s0014g05100.t01 | Wine grape | nucleus | 80.51 | 80.17 |
| KRH22229 | Soybean | nucleus | 79.24 | 79.91 |
| KRH27110 | Soybean | nucleus | 78.39 | 79.4 |
| PGSC0003DMT400049592 | Potato | nucleus | 72.88 | 73.82 |
| Solyc07g064040.2.1 | Tomato | nucleus | 71.19 | 72.1 |
| Bra022738.1-P | Field mustard | nucleus | 69.92 | 70.21 |
| CDY28758 | Canola | nucleus | 69.92 | 70.21 |
| Solyc10g006510.2.1 | Tomato | nucleus | 67.8 | 69.26 |
| PGSC0003DMT400037405 | Potato | nucleus | 67.37 | 68.83 |
| AT5G54680.1 | Thale cress | nucleus | 68.22 | 68.8 |
| CDY41004 | Canola | nucleus | 68.22 | 68.51 |
| KRH21650 | Soybean | cytosol, nucleus, plastid | 41.53 | 68.06 |
| CDY42475 | Canola | nucleus | 66.95 | 67.81 |
| Bra002964.1-P | Field mustard | nucleus | 66.53 | 67.38 |
| CDY71937 | Canola | cytosol, nucleus | 61.86 | 66.67 |
| CDY47456 | Canola | nucleus | 65.68 | 66.52 |
| CDY43028 | Canola | nucleus | 66.95 | 66.39 |
| Bra030459.1-P | Field mustard | nucleus | 62.71 | 65.78 |
| Bra029011.1-P | Field mustard | nucleus | 66.1 | 65.55 |
| CDY43809 | Canola | nucleus | 65.25 | 64.71 |
| CDY35576 | Canola | nucleus | 61.86 | 64.04 |
| KRH10681 | Soybean | nucleus | 24.58 | 63.74 |
| KRH10685 | Soybean | nucleus | 55.51 | 61.79 |
| KRH26841 | Soybean | nucleus | 54.66 | 57.59 |
| KRH22510 | Soybean | nucleus | 55.93 | 57.14 |
| KRG90395 | Soybean | cytosol, mitochondrion, nucleus | 46.19 | 49.55 |
| AT1G51070.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 60.59 | 48.97 |
| KRH31712 | Soybean | cytosol, mitochondrion, nucleus | 44.07 | 47.71 |
| KRH24147 | Soybean | nucleus | 29.24 | 25.09 |
| KRH13089 | Soybean | nucleus | 27.97 | 23.49 |
| KRH43415 | Soybean | nucleus | 27.97 | 23.32 |
| KRH49674 | Soybean | nucleus, plastid | 27.97 | 20.06 |
Protein Annotations
| EntrezGene:100783689 | MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | EMBL:ACUP02007375 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_12G136300 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| UniProt:I1LSN4 | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlants:KRH25888 | ProteinID:KRH25888 | ProteinID:KRH25888.1 |
| EMBL:KT031119 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF78 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000233CD17 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr12:-:16036485..16039860
Molecular Weight (calculated)
25865.8 Da
IEP (calculated)
8.697
GRAVY (calculated)
-0.553
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSRENTNWL FDYGLIDDIP VPDATFGVNS SAFTWPPNAL DAPSNVGVDI DGSLGDSDGL KESGSKKRVR SESCAASSSK ACREKLRRDR LNDKFVELGS
101: ILEPGRPAKT DKTAILIDAV RMVTQLRGEA QKLKDTNQGL QEKIKDLKAE KNELRDQKQR LKAEKEKLEQ QLKSLNGQPS FMPPPAAIPA AFAVQGQAHG
201: NKLVPFISYP GVAMWQFMPP AAVDTSQDHV LRPPVA
101: ILEPGRPAKT DKTAILIDAV RMVTQLRGEA QKLKDTNQGL QEKIKDLKAE KNELRDQKQR LKAEKEKLEQ QLKSLNGQPS FMPPPAAIPA AFAVQGQAHG
201: NKLVPFISYP GVAMWQFMPP AAVDTSQDHV LRPPVA
001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
Arabidopsis Description
ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.