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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, nucleus, endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • endoplasmic reticulum 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, nucleus
Any Predictor:cytosol, endoplasmic reticulum, nucleus
BaCelLo:nucleus
MultiLoc:endoplasmic reticulum
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY71937 Canola cytosol, nucleus 65.75 87.67
Bra030459.1-P Field mustard nucleus 67.47 87.56
CDY35576 Canola nucleus 67.81 86.84
KRH22229 Soybean nucleus 50.34 62.82
VIT_19s0014g05100.t01 Wine grape nucleus 50.68 62.45
PGSC0003DMT400049592 Potato nucleus 49.32 61.8
KRH55616 Soybean cytosol, nucleus, plastid 49.66 61.44
KRH27110 Soybean nucleus 48.97 61.37
KRH25888 Soybean cytosol, nucleus, plastid 48.97 60.59
Solyc07g064040.2.1 Tomato nucleus 48.29 60.52
AT5G54680.1 Thale cress nucleus 48.29 60.26
PGSC0003DMT400037405 Potato nucleus 46.92 59.31
Solyc10g006510.2.1 Tomato nucleus 46.23 58.44
AT4G14410.1 Thale cress nucleus 33.22 34.28
AT3G23210.1 Thale cress nucleus 33.56 30.62
AT3G19860.2 Thale cress nucleus 20.21 17.51
AT4G36060.3 Thale cress nucleus, plastid 15.75 16.03
Protein Annotations
MapMan:15.5.32MapMan:25.4.1.2Gene3D:4.10.280.10EntrezGene:841529ProteinID:AEE32619.1ArrayExpress:AT1G51070
EnsemblPlantsGene:AT1G51070RefSeq:AT1G51070TAIR:AT1G51070RefSeq:AT1G51070-TAIR-GEnsemblPlants:AT1G51070.2TAIR:AT1G51070.2
Unigene:At.17182ncoils:CoilUniProt:F4I7Z3GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0006139GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0046983GO:GO:0055072InterPro:HLH_DNA-bd_sf
InterPro:IPR011598InterPro:IPR036638RefSeq:NP_001185192.1PFAM:PF00010PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS50888PANTHER:PTHR23042
PANTHER:PTHR23042:SF78SMART:SM00353SUPFAM:SSF47459UniParc:UPI0001E92AF2Symbol:bHLH115InterPro:bHLH_dom
Description
bHLH115Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7Z3]
Coordinates
chr1:+:18927877..18929680
Molecular Weight (calculated)
33137.7 Da
IEP (calculated)
8.194
GRAVY (calculated)
-0.515
Length
292 amino acids
Sequence
(BLAST)
001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVRIG SYIWRSCYGC VITQLVFRCS CCDRDIGLLH KSILCFFFCL RFAYVPLFPK EVDESRSLPI
101: AKGSVEVDGF LCDADVIKEP SSRKRIKTES CTGSNSKACR EKQRRDRLND KFTELSSVLE PGRTPKTDKV AIINDAIRMV NQARDEAQKL KDLNSSLQEK
201: IKELKDEKNE LRDEKQKLKV EKERIDQQLK AIKTQPQPQP CFLPNPQTLS QAQAPGSKLV PFTTYPGFAM WQFMPPAAVD TSQDHVLRPP VA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.