Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49420 | Canola | nucleus | 80.92 | 82.08 |
| Bra041033.1-P | Field mustard | nucleus | 81.27 | 80.7 |
| CDY12770 | Canola | nucleus | 80.92 | 80.63 |
| AT3G23210.1 | Thale cress | nucleus | 65.02 | 57.5 |
| KRG90395 | Soybean | cytosol, mitochondrion, nucleus | 44.52 | 57.27 |
| VIT_05s0049g00460.t01 | Wine grape | cytosol, nucleus, plasma membrane | 43.46 | 56.68 |
| Solyc09g089870.2.1 | Tomato | nucleus | 44.88 | 56.19 |
| KRH31712 | Soybean | cytosol, mitochondrion, nucleus | 42.76 | 55.5 |
| PGSC0003DMT400044234 | Potato | nucleus | 43.82 | 54.87 |
| GSMUA_Achr10P... | Banana | cytosol | 24.03 | 46.9 |
| GSMUA_Achr7P10830_001 | Banana | cytosol, nucleus, plastid | 23.67 | 46.85 |
| AT5G54680.1 | Thale cress | nucleus | 33.57 | 40.6 |
| GSMUA_Achr10P... | Banana | plastid | 25.8 | 40.11 |
| Os05t0455400-01 | Rice | cytosol | 20.85 | 39.86 |
| EES18337 | Sorghum | nucleus | 32.51 | 38.17 |
| HORVU1Hr1G072810.2 | Barley | nucleus | 31.1 | 36.97 |
| GSMUA_Achr2P16550_001 | Banana | cytosol | 29.68 | 36.52 |
| TraesCS1A01G281300.1 | Wheat | cytosol, mitochondrion, nucleus | 30.74 | 36.25 |
| TraesCS1B01G290500.1 | Wheat | cytosol | 30.74 | 35.95 |
| TraesCS1D01G280600.1 | Wheat | cytosol, mitochondrion, nucleus | 30.39 | 35.68 |
| AT1G51070.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 34.28 | 33.22 |
| Zm00001d038357_P001 | Maize | cytosol, nucleus, plastid | 32.86 | 32.63 |
| AT3G19860.2 | Thale cress | nucleus | 22.97 | 19.29 |
| AT4G36060.3 | Thale cress | nucleus, plastid | 17.67 | 17.42 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | EntrezGene:827086 | ProteinID:AEE83441.1 | ProteinID:AEE83442.1 |
| EMBL:AF488628 | ProteinID:ANM66359.1 | ArrayExpress:AT4G14410 | EnsemblPlantsGene:AT4G14410 | RefSeq:AT4G14410 | TAIR:AT4G14410 |
| RefSeq:AT4G14410-TAIR-G | EnsemblPlants:AT4G14410.1 | TAIR:AT4G14410.1 | EMBL:AY088053 | EMBL:AY102106 | EMBL:AY133565 |
| ProteinID:CAB10220.1 | ProteinID:CAB78483.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0046983 | GO:GO:0071333 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_001328258.1 | RefSeq:NP_567431.1 | RefSeq:NP_849383.1 | PFAM:PF00010 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50888 | PANTHER:PTHR23042 |
| PANTHER:PTHR23042:SF72 | UniProt:Q8L467 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00000AB5AE | Symbol:bHLH104 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BHLH104Transcription factor bHLH104 [Source:UniProtKB/Swiss-Prot;Acc:Q8L467]
Coordinates
chr4:+:8299397..8301667
Molecular Weight (calculated)
31997.2 Da
IEP (calculated)
4.358
GRAVY (calculated)
-0.799
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPSLDDDFV SDLFCFDQSN GAELDDYTQF GVNLQTDQED TFPDFVSYGV NLQQEPDEVF SIGASQLDLS SYNGVLSLEP EQVGQQDCEV VQEEEVEINS
101: GSSGGAVKEE QEHLDDDCSR KRARTGSCSR GGGTKACRER LRREKLNERF MDLSSVLEPG RTPKTDKPAI LDDAIRILNQ LRDEALKLEE TNQKLLEEIK
201: SLKAEKNELR EEKLVLKADK EKTEQQLKSM TAPSSGFIPH IPAAFNHNKM AVYPSYGYMP MWHYMPQSVR DTSRDQELRP PAA
101: GSSGGAVKEE QEHLDDDCSR KRARTGSCSR GGGTKACRER LRREKLNERF MDLSSVLEPG RTPKTDKPAI LDDAIRILNQ LRDEALKLEE TNQKLLEEIK
201: SLKAEKNELR EEKLVLKADK EKTEQQLKSM TAPSSGFIPH IPAAFNHNKM AVYPSYGYMP MWHYMPQSVR DTSRDQELRP PAA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.