Factsheet for GSMUA_Achr7P10830_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	76.92	75.86
Os05t0455400-01	Rice	cytosol	51.75	50.0
GSMUA_Achr10P...	Banana	plastid	61.54	48.35
GSMUA_Achr2P16550_001	Banana	cytosol	76.22	47.39
GSMUA_Achr10P...	Banana	cytosol	37.06	41.41
Bra023751.1-P	Field mustard	nucleus	40.56	37.18
EES18337	Sorghum	nucleus	58.04	34.44
TraesCS1A01G281300.1	Wheat	cytosol, mitochondrion, nucleus	57.34	34.17
HORVU1Hr1G072810.2	Barley	nucleus	56.64	34.03
TraesCS1D01G280600.1	Wheat	cytosol, mitochondrion, nucleus	57.34	34.02
TraesCS1B01G290500.1	Wheat	cytosol	57.34	33.88
VIT_05s0049g00460.t01	Wine grape	cytosol, nucleus, plasma membrane	51.05	33.64
VIT_14s0081g00720.t01	Wine grape	nucleus	46.85	31.02
GSMUA_Achr4P05310_001	Banana	nucleus	48.25	30.13
GSMUA_Achr7P04180_001	Banana	nucleus	46.85	29.65
GSMUA_Achr3P23080_001	Banana	nucleus	47.55	29.57
KRH31712	Soybean	cytosol, mitochondrion, nucleus	44.76	29.36
GSMUA_Achr4P05280_001	Banana	nucleus	46.85	29.26
KRG90395	Soybean	cytosol, mitochondrion, nucleus	44.76	29.09
Zm00001d038357_P001	Maize	cytosol, nucleus, plastid	56.64	28.42
PGSC0003DMT400044234	Potato	nucleus	44.76	28.32
Solyc09g089870.2.1	Tomato	nucleus	44.76	28.32
GSMUA_Achr8P33180_001	Banana	nucleus	43.36	27.43
AT4G14410.1	Thale cress	nucleus	46.85	23.67
CDY49420	Canola	nucleus	45.45	23.3
CDY12770	Canola	nucleus	45.45	22.89
Bra041033.1-P	Field mustard	nucleus	45.45	22.81
GSMUA_Achr11P...	Banana	cytosol	27.27	21.31
CDX77539	Canola	nucleus	41.26	20.34
Bra014923.1-P	Field mustard	nucleus	41.26	20.34
AT3G23210.1	Thale cress	nucleus	45.45	20.31
CDY08983	Canola	nucleus	41.26	19.93
CDY35510	Canola	nucleus	40.56	19.73
CDX85069	Canola	nucleus	41.26	19.28

Protein Annotations

EnsemblPlants:GSMUA_Achr7P10830_001	EnsemblPlants:GSMUA_Achr7T10830_001	EnsemblPlantsGene:GSMUA_Achr7G10830_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR036638	ncoils:Coil	PANTHER:PTHR23042
PANTHER:PTHR23042:SF72	SEG:seg	UniParc:UPI000295B5E1	UniProt:M0TGH1	MapMan:15.5.32	MapMan:25.4.1.2

Description

Transcription factor bHLH115 [Source:GMGC_GENE;Acc:GSMUA_Achr7G10830_001]

Coordinates

chr7:+:8683850..8684734

Molecular Weight (calculated)

16087.7 Da

IEP (calculated)

10.267

GRAVY (calculated)

-0.520

Length

143 amino acids

Sequence
(BLAST)

001: MIRFTELCSV MDPGKPPKTD KSAILSDATR LMNHLRLEAK KLKDSNEAFK DAIKSLKAEK LELRDEKMRL KAEKERTEQM LKAISTTPQF MTQPAAATPH
101: SASVAAHIKT IPHPSYMPMG MWRWIPPAAL DTSQDHVLRP PVA

Best Arabidopsis Sequence Match ( AT1G51070.1 )
(BLAST)

001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVSVE VDGFLCDADV IKEPSSRKRI KTESCTGSNS KACREKQRRD RLNDKFTELS SVLEPGRTPK
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA

Arabidopsis Description

bHLH115Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7Z3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.