Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05310_001 | Banana | nucleus | 86.9 | 86.9 |
| GSMUA_Achr7P04180_001 | Banana | nucleus | 65.5 | 66.37 |
| Os02t0116600-01 | Rice | cytosol | 60.26 | 58.47 |
| KXG29296 | Sorghum | cytosol, mitochondrion, nucleus | 58.08 | 57.58 |
| Zm00001d054038_P003 | Maize | nucleus | 58.08 | 57.33 |
| Zm00001d014995_P001 | Maize | nucleus | 58.08 | 56.36 |
| TraesCS6D01G051600.2 | Wheat | nucleus | 56.33 | 52.02 |
| TraesCS6B01G060700.2 | Wheat | nucleus | 55.46 | 51.21 |
| GSMUA_Achr10P... | Banana | cytosol | 28.38 | 50.78 |
| TraesCS6A01G045100.1 | Wheat | nucleus | 52.84 | 50.0 |
| GSMUA_Achr7P10830_001 | Banana | cytosol, nucleus, plastid | 29.26 | 46.85 |
| GSMUA_Achr10P... | Banana | cytosol | 28.82 | 45.52 |
| GSMUA_Achr3P23080_001 | Banana | nucleus | 44.54 | 44.35 |
| GSMUA_Achr10P... | Banana | plastid | 34.5 | 43.41 |
| GSMUA_Achr8P33180_001 | Banana | nucleus | 41.92 | 42.48 |
| GSMUA_Achr2P16550_001 | Banana | cytosol | 41.92 | 41.74 |
| GSMUA_Achr11P... | Banana | cytosol | 29.69 | 37.16 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr4G05280_001 | EnsemblPlants:GSMUA_Achr4P05280_001 | EnsemblPlants:GSMUA_Achr4T05280_001 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0SL95 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 |
| PANTHER:PTHR23042:SF66 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002956907 | InterPro:bHLH_dom | SEG:seg |
Description
basic helix-loop-helix DND-binding domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G05280_001]
Coordinates
chr4:+:4072816..4075840
Molecular Weight (calculated)
25839.0 Da
IEP (calculated)
9.924
GRAVY (calculated)
-0.761
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTDPIEDFW IDGGGSDSEL QYALDGFRDM VPTVGVGKEE PYRDLRGLEQ NSSRKRARNE PRASKSKACR EKIRRDRQNK RFIELSSILD PGRPPRADKA
101: SILGDATRVL MRLRAEAQEL KESNKKLHET IKDMKVEKNE LREEKMRLKA DKDRLEQQIK VLSVPPVGFL PHPIAFHPAA APAAFVPQVQ ASADKTAPFS
201: GFPGMAMWQW LPPAVMDTTQ DPKLWPPNA
101: SILGDATRVL MRLRAEAQEL KESNKKLHET IKDMKVEKNE LREEKMRLKA DKDRLEQQIK VLSVPPVGFL PHPIAFHPAA APAAFVPQVQ ASADKTAPFS
201: GFPGMAMWQW LPPAVMDTTQ DPKLWPPNA
001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVSVE VDGFLCDADV IKEPSSRKRI KTESCTGSNS KACREKQRRD RLNDKFTELS SVLEPGRTPK
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA
Arabidopsis Description
bHLH115Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7Z3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.