Factsheet for Os02t0116600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29296	Sorghum	cytosol, mitochondrion, nucleus	78.81	80.52
Zm00001d054038_P003	Maize	nucleus	76.27	77.59
Zm00001d014995_P001	Maize	nucleus	75.85	75.85
TraesCS6B01G060700.2	Wheat	nucleus	75.0	71.37
TraesCS6D01G051600.2	Wheat	nucleus	75.0	71.37
TraesCS6A01G045100.1	Wheat	nucleus	68.22	66.53
GSMUA_Achr4P05310_001	Banana	nucleus	59.32	61.14
GSMUA_Achr4P05280_001	Banana	nucleus	58.47	60.26
GSMUA_Achr7P04180_001	Banana	nucleus	57.2	59.73
Os05t0455400-01	Rice	cytosol	32.2	51.35
Os07t0543000-01	Rice	nucleus	46.19	42.58
Os08t0138500-01	Rice	nucleus	43.64	40.71
Os02t0433600-01	Rice	nucleus	28.39	19.53

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	EntrezGene:4328080	EMBL:AK060881	EMBL:AK103434
EMBL:AK104188	ProteinID:BAD07720.1	ProteinID:BAF07594.1	ProteinID:BAS76659.1	ncoils:Coil	ProteinID:EAZ21498.1
EMBL:EU837263	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	EMBL:HQ858854	InterPro:IPR011598
InterPro:IPR036638	EnsemblPlantsGene:Os02g0116600	EnsemblPlants:Os02t0116600-01	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR23042
PANTHER:PTHR23042:SF66	UniProt:Q6ZGM4	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00002367B6	RefSeq:XP_015626366.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

basic helix-loop-helix protein 059Helix-loop-helix DNA-binding domain containing protein. (Os02t0116600-01);Helix-loop-helix DNA-binding domain containing protein. (Os02t0116600-02)

Coordinates

chr2:-:875964..878615

Molecular Weight (calculated)

25594.3 Da

IEP (calculated)

4.924

GRAVY (calculated)

-0.565

Length

236 amino acids

Sequence
(BLAST)

001: MDGGGDPVDE FLIGGGGEDG DLGVFCDGVP TLPCDGGLGI DDVSGDTCCL DQSVLGKRGR DESSSSGPKS KACREKIRRD RLNDRFLELS SVINPDKQAK
101: LDKANILSDA ARLLAELRGE AEKLKESNEK LRETIKDLKV EKNELRDEKV TLKAEKERLE QQVKALSVAP TGFVPHLPHP AAFHPAAFPP FIPPYQALGN
201: KNAPTPAAFQ GMAMWQWLPP TAVDTTQDPK LWPPNA

Best Arabidopsis Sequence Match ( AT5G54680.1 )
(BLAST)

001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA

Arabidopsis Description

ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.