Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G221200.1 | Wheat | nucleus | 78.91 | 80.48 |
| EER99495 | Sorghum | nucleus | 79.69 | 80.31 |
| Zm00001d021701_P002 | Maize | nucleus | 78.52 | 79.76 |
| TraesCS2A01G215600.1 | Wheat | nucleus | 78.12 | 79.68 |
| TraesCS2B01G240600.1 | Wheat | nucleus | 78.12 | 79.68 |
| HORVU2Hr1G044230.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 77.73 | 67.69 |
| Os08t0138500-01 | Rice | nucleus | 53.52 | 54.15 |
| Os05t0455400-01 | Rice | cytosol | 29.69 | 51.35 |
| Os02t0116600-01 | Rice | cytosol | 42.58 | 46.19 |
| Os02t0433600-01 | Rice | nucleus | 28.12 | 20.99 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | EntrezGene:4343509 | EMBL:AB110196 | EMBL:AB110223 |
| EMBL:AK058889 | ProteinID:BAC83769.1 | ProteinID:BAF21819.1 | ProteinID:BAT01985.1 | ncoils:Coil | ProteinID:EEE67352.1 |
| EMBL:EU837260 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os07g0543000 | EnsemblPlants:Os07t0543000-01 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF78 | UniProt:Q7XXQ5 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00001AB0CE |
| RefSeq:XP_015647705.1 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
basic helix-loop-helix protein 057Similar to Helix-loop-helix-like protein (Fragment). (Os07t0543000-01);Similar to Helix-loop-helix-like protein (Fragment). (Os07t0543000-02)
Coordinates
chr7:-:21466858..21469857
Molecular Weight (calculated)
27875.1 Da
IEP (calculated)
5.925
GRAVY (calculated)
-0.655
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPEGSTWV FDCPLMDDLA AAAGFDAAPA GGFYWTTPAP PQAALQPPPP QQQPVAPATA APNACAEING SVDCEHGKEQ PTNKRPRSES GTRPSSKACR
101: EKVRRDKLNE RFLELGAVLE PGKTPKMDKS SILNDAIRVM AELRSEAQKL KESNESLQEK IKELKAEKNE LRDEKQKLKA EKESLEQQIK FLNARPSFVP
201: HPPVIPASAF TAPQGQAAGQ KLMMPVIGYP GFPMWQFMPP SDVDTTDDTK SCPPVA
101: EKVRRDKLNE RFLELGAVLE PGKTPKMDKS SILNDAIRVM AELRSEAQKL KESNESLQEK IKELKAEKNE LRDEKQKLKA EKESLEQQIK FLNARPSFVP
201: HPPVIPASAF TAPQGQAAGQ KLMMPVIGYP GFPMWQFMPP SDVDTTDDTK SCPPVA
001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
Arabidopsis Description
ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.