CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021701_P002	Maize	nucleus	93.31	94.05
Os07t0543000-01	Rice	nucleus	80.31	79.69
TraesCS2D01G221200.1	Wheat	nucleus	77.95	78.88
TraesCS2A01G215600.1	Wheat	nucleus	77.17	78.09
TraesCS2B01G240600.1	Wheat	nucleus	77.17	78.09
HORVU2Hr1G044230.1	Barley	cytosol, mitochondrion, nucleus, plastid	77.17	66.67
KXG24376	Sorghum	nucleus	51.97	52.8
EES18337	Sorghum	nucleus	40.94	43.15
KXG29296	Sorghum	cytosol, mitochondrion, nucleus	37.01	40.69
EES03283	Sorghum	nucleus	24.41	19.62

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	EntrezGene:8081711	UniProt:C5XAT2	ncoils:Coil
EnsemblPlants:EER99495	ProteinID:EER99495	ProteinID:EER99495.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR23042	PANTHER:PTHR23042:SF78	SMART:SM00353	EnsemblPlantsGene:SORBI_3002G329300	SUPFAM:SSF47459	unigene:Sbi.3902
UniParc:UPI0001A84144	RefSeq:XP_002462974.1	InterPro:bHLH_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:69833120..69836569

Molecular Weight (calculated)

27581.8 Da

IEP (calculated)

5.464

GRAVY (calculated)

-0.476

Length

254 amino acids

Sequence
(BLAST)

001: MASPEGTTWV FDCPLMDDLA VAADFAAAPA GGFFWAAPPS LQPQVVQAPV QSVVAASAPN PCVEISSSVD CGQGKEQPTN KRPRSESTAE PSTKASREKI
101: RRDKLNERFL ELGAILEPGK TPKMDKSAIL NDAIRVVGEL RSEAKELKDS NESLQEKIKE LKAEKNELRD EKQRLKAEKE SLEQQIKFLN ARPSLVPHHP
201: VISASAFTAP QGPAVAGHKL MMPVLGYPGF PMWQFMPPSD VDTSDDPKSC PPVA

Best Arabidopsis Sequence Match ( AT5G54680.1 )
(BLAST)

001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA

Arabidopsis Description

ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.