Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G221200.1 | Wheat | nucleus | 83.33 | 97.61 |
| TraesCS2A01G215600.1 | Wheat | nucleus | 82.65 | 96.81 |
| TraesCS2B01G240600.1 | Wheat | nucleus | 82.65 | 96.81 |
| Os07t0543000-01 | Rice | nucleus | 67.69 | 77.73 |
| EER99495 | Sorghum | nucleus | 66.67 | 77.17 |
| Zm00001d021701_P002 | Maize | nucleus | 65.31 | 76.19 |
| HORVU7Hr1G073310.5 | Barley | cytosol | 41.16 | 48.99 |
| HORVU1Hr1G072810.2 | Barley | nucleus | 36.05 | 44.54 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G044230.1 | EnsemblPlantsGene:HORVU2Hr1G044230 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF78 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000B47B7E0 | UniProt:A0A287HUA4 | MapMan:15.5.32 | MapMan:25.4.1.2 | : |
Description
No Description!
Coordinates
chrchr2H:-:230221885..230224695
Molecular Weight (calculated)
32426.7 Da
IEP (calculated)
8.488
GRAVY (calculated)
-0.698
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: PRPLHPLLPT PPPQPRNIPQ LRRDRETLVP RQPSLDPGSR SGAMASPEGS NWVFDCPLMD DLAAADFAAV PAGGFYWNPP MPPQMHTLAQ AVSATPAPNP
101: CAEINSSVSV DWDHAKGQPK NKRPRSETGA QPSSKACREK VRRDKLNERF LELGAVLDPG KTPKIDKCAI LNDAIRAVTE LRSEAEKLKD SNESLQEKIR
201: ELKAEKNELR DEKQKLKAEK ESLEQQIKFM NARQRLVPHP SVIPATAFAA AQGQAAGHKL MMPVMSYPGF PMWQFMPPSD VDTSDDPKSC PPVA
101: CAEINSSVSV DWDHAKGQPK NKRPRSETGA QPSSKACREK VRRDKLNERF LELGAVLDPG KTPKIDKCAI LNDAIRAVTE LRSEAEKLKD SNESLQEKIR
201: ELKAEKNELR DEKQKLKAEK ESLEQQIKFM NARQRLVPHP SVIPATAFAA AQGQAAGHKL MMPVMSYPGF PMWQFMPPSD VDTSDDPKSC PPVA
001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
Arabidopsis Description
ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.