Factsheet for HORVU1Hr1G072810.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G281300.1	Wheat	cytosol, mitochondrion, nucleus	94.96	94.17
TraesCS1B01G290500.1	Wheat	cytosol	94.96	93.39
TraesCS1D01G280600.1	Wheat	cytosol, mitochondrion, nucleus	94.54	93.36
EES18337	Sorghum	nucleus	84.87	83.82
Os05t0455400-01	Rice	cytosol	48.32	77.7
Zm00001d038357_P001	Maize	cytosol, nucleus, plastid	81.93	68.42
GSMUA_Achr7P10830_001	Banana	cytosol, nucleus, plastid	34.03	56.64
GSMUA_Achr10P...	Banana	cytosol	34.45	56.55
GSMUA_Achr10P...	Banana	plastid	42.02	54.95
GSMUA_Achr2P16550_001	Banana	cytosol	52.52	54.35
KRG90395	Soybean	cytosol, mitochondrion, nucleus	41.18	44.55
KRH31712	Soybean	cytosol, mitochondrion, nucleus	40.34	44.04
VIT_05s0049g00460.t01	Wine grape	cytosol, nucleus, plasma membrane	39.92	43.78
Solyc09g089870.2.1	Tomato	nucleus	39.5	41.59
PGSC0003DMT400044234	Potato	nucleus	38.66	40.71
HORVU7Hr1G073310.5	Barley	cytosol	42.02	40.49
VIT_14s0081g00720.t01	Wine grape	nucleus	36.55	40.28
Bra023751.1-P	Field mustard	nucleus	24.37	37.18
HORVU2Hr1G044230.1	Barley	cytosol, mitochondrion, nucleus, plastid	44.54	36.05
AT4G14410.1	Thale cress	nucleus	36.97	31.1
CDY49420	Canola	nucleus	36.13	30.82
CDY12770	Canola	nucleus	36.13	30.28
Bra041033.1-P	Field mustard	nucleus	36.13	30.18
AT3G23210.1	Thale cress	nucleus	37.4	27.81
Bra014923.1-P	Field mustard	nucleus	33.61	27.59
CDX77539	Canola	nucleus	33.19	27.24
CDY08983	Canola	nucleus	32.77	26.35
CDY35510	Canola	nucleus	31.93	25.85
CDX85069	Canola	nucleus	33.19	25.82

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	EMBL:AK355805	EMBL:AK372168	ncoils:Coil
UniProt:F2CW02	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
EnsemblPlantsGene:HORVU1Hr1G072810	EnsemblPlants:HORVU1Hr1G072810.2	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR23042	PANTHER:PTHR23042:SF78	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002004AF4	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CW02]

Coordinates

chrchr1H:+:499154869..499157373

Molecular Weight (calculated)

25918.6 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.592

Length

238 amino acids

Sequence
(BLAST)

001: MSCGGGQSGW LLDYGLVEEE IQASDFIYMV DDPPVSSAML GFDAPRKEDA AAARDNSGAK KRSRPESSAQ PGTKACREKL RRDRLNERFN ELCAVLEPGK
101: PPKADKVAIL SDATRLLDQL RAEAQQLKSS NESLQDSIKS LKSEKSELRD EKTKLKAERE RLEQMLKGVS AAAAPRQFIP HPAAAAAPQF HPAAAFAHAG
201: KFVPAYAAGY PPPAAFWQWI PPTSLDTSKD PAHWPPVA

Best Arabidopsis Sequence Match ( AT3G23210.2 )
(BLAST)

001: MQTNEDNIFQ DFGSCGVNLM QPQQEQFDSF NGNLEQVCSS FRGGNNGVVY SSSIGSAQLD LAASFSGVLQ QETHQVCGFR GQNDDSAVPH LQQQQGQVFS
101: GVVEINSSSS VGAVKEEFEE ECSGKRRRTG SCSKPGTKAC REKLRREKLN DKFMDLSSVL EPGRTPKTDK SAILDDAIRV VNQLRGEAHE LQETNQKLLE
201: EIKSLKADKN ELREEKLVLK AEKEKMEQQL KSMVVPSPGF MPSQHPAAFH SHKMAVAYPY GYYPPNMPMW SPLPPADRDT SRDLKNLPPV A

Arabidopsis Description

BHLH34Transcription factor bHLH34 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.