Factsheet for Bra023751.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35510	Canola	nucleus	97.44	51.7
Bra014923.1-P	Field mustard	nucleus	89.1	47.93
KRG90395	Soybean	cytosol, mitochondrion, nucleus	58.33	41.36
KRH31712	Soybean	cytosol, mitochondrion, nucleus	57.05	40.83
GSMUA_Achr7P10830_001	Banana	cytosol, nucleus, plastid	37.18	40.56
Bra041033.1-P	Field mustard	nucleus	69.87	38.25
AT3G23210.1	Thale cress	nucleus	78.21	38.12
GSMUA_Achr10P...	Banana	cytosol	35.26	37.93
VIT_05s0049g00460.t01	Wine grape	cytosol, nucleus, plasma membrane	52.56	37.79
PGSC0003DMT400044234	Potato	nucleus	53.21	36.73
Solyc09g089870.2.1	Tomato	nucleus	52.56	36.28
Os05t0455400-01	Rice	cytosol	32.05	33.78
Bra022738.1-P	Field mustard	nucleus	44.87	29.79
Bra002964.1-P	Field mustard	nucleus	42.95	28.76
GSMUA_Achr10P...	Banana	plastid	33.33	28.57
Bra029011.1-P	Field mustard	nucleus	42.31	27.73
Bra030459.1-P	Field mustard	nucleus	39.74	27.56
EES18337	Sorghum	nucleus	38.46	24.9
HORVU1Hr1G072810.2	Barley	nucleus	37.18	24.37
TraesCS1A01G281300.1	Wheat	cytosol, mitochondrion, nucleus	36.54	23.75
TraesCS1B01G290500.1	Wheat	cytosol	36.54	23.55
GSMUA_Achr2P16550_001	Banana	cytosol	34.62	23.48
TraesCS1D01G280600.1	Wheat	cytosol, mitochondrion, nucleus	35.9	23.24
Zm00001d038357_P001	Maize	cytosol, nucleus, plastid	39.74	21.75
Bra011658.1-P	Field mustard	cytosol	10.9	20.24
Bra017745.1-P	Field mustard	nucleus	26.28	16.73

Protein Annotations

EnsemblPlants:Bra023751.1	EnsemblPlants:Bra023751.1-P	EnsemblPlantsGene:Bra023751	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR036638	ncoils:Coil	PANTHER:PTHR23042
PANTHER:PTHR23042:SF72	SUPFAM:SSF47459	UniParc:UPI0002543F64	UniProt:M4E4P7	MapMan:15.5.32	MapMan:25.4.1.2

Description

AT3G23210 (E=9e-050) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA01:+:19631508..19632711

Molecular Weight (calculated)

17889.4 Da

IEP (calculated)

5.078

GRAVY (calculated)

-0.769

Length

156 amino acids

Sequence
(BLAST)

001: MYQSNEDDDD LLASLCFDQR FMDLSSVLEP TRTPKTDKPV ILDDAIRVVN HLRGEAHELK ETNQKLLEEI KSLKAEKNEL REEKMVLKSD KEKMEQQMRS
101: MAAVPSPGFM PAAFHQNKMA VYGSYGYYPN IPMMPYLLPP SQRDTSEDQK NCSKAA

Best Arabidopsis Sequence Match ( AT3G23210.2 )
(BLAST)

001: MQTNEDNIFQ DFGSCGVNLM QPQQEQFDSF NGNLEQVCSS FRGGNNGVVY SSSIGSAQLD LAASFSGVLQ QETHQVCGFR GQNDDSAVPH LQQQQGQVFS
101: GVVEINSSSS VGAVKEEFEE ECSGKRRRTG SCSKPGTKAC REKLRREKLN DKFMDLSSVL EPGRTPKTDK SAILDDAIRV VNQLRGEAHE LQETNQKLLE
201: EIKSLKADKN ELREEKLVLK AEKEKMEQQL KSMVVPSPGF MPSQHPAAFH SHKMAVAYPY GYYPPNMPMW SPLPPADRDT SRDLKNLPPV A

Arabidopsis Description

BHLH34Transcription factor bHLH34 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.