CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G281300.1	Wheat	cytosol, mitochondrion, nucleus	85.89	86.25
TraesCS1D01G280600.1	Wheat	cytosol, mitochondrion, nucleus	85.48	85.48
TraesCS1B01G290500.1	Wheat	cytosol	85.48	85.12
HORVU1Hr1G072810.2	Barley	nucleus	83.82	84.87
Os05t0455400-01	Rice	cytosol	50.62	82.43
Zm00001d038357_P001	Maize	cytosol, nucleus, plastid	92.53	78.25
GSMUA_Achr10P...	Banana	cytosol	35.68	59.31
GSMUA_Achr7P10830_001	Banana	cytosol, nucleus, plastid	34.44	58.04
GSMUA_Achr10P...	Banana	plastid	41.91	55.49
GSMUA_Achr2P16550_001	Banana	cytosol	51.87	54.35
KRG90395	Soybean	cytosol, mitochondrion, nucleus	42.32	46.36
KXG29296	Sorghum	cytosol, mitochondrion, nucleus	43.98	45.89
KRH31712	Soybean	cytosol, mitochondrion, nucleus	41.08	45.41
VIT_05s0049g00460.t01	Wine grape	cytosol, nucleus, plasma membrane	40.66	45.16
Solyc09g089870.2.1	Tomato	nucleus	39.42	42.04
VIT_14s0081g00720.t01	Wine grape	nucleus	36.93	41.2
PGSC0003DMT400044234	Potato	nucleus	38.59	41.15
EER99495	Sorghum	nucleus	43.15	40.94
KXG24376	Sorghum	nucleus	42.32	40.8
Bra023751.1-P	Field mustard	nucleus	24.9	38.46
CDY49420	Canola	nucleus	37.76	32.62
AT4G14410.1	Thale cress	nucleus	38.17	32.51
CDY12770	Canola	nucleus	37.76	32.04
Bra041033.1-P	Field mustard	nucleus	37.76	31.93
Bra014923.1-P	Field mustard	nucleus	34.44	28.62
CDX77539	Canola	nucleus	34.02	28.28
AT3G23210.1	Thale cress	nucleus	37.34	28.12
CDY08983	Canola	nucleus	33.2	27.03
CDX85069	Canola	nucleus	34.02	26.8
CDY35510	Canola	nucleus	32.37	26.53
EES03283	Sorghum	nucleus	26.97	20.57

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	EntrezGene:8072534	UniProt:C5YZ70	ncoils:Coil
EnsemblPlants:EES18337	ProteinID:EES18337	ProteinID:EES18337.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR23042	PANTHER:PTHR23042:SF78	SMART:SM00353	EnsemblPlantsGene:SORBI_3009G160000	SUPFAM:SSF47459	unigene:Sbi.15134
UniParc:UPI0001A888E8	RefSeq:XP_002439907.1	InterPro:bHLH_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:51777615..51779915

Molecular Weight (calculated)

26110.9 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.539

Length

241 amino acids

Sequence
(BLAST)

001: MSCTGAGQAG GGWLLDYGLV EEEIQGSEFM YMVDDPAVSS VILGFDAPRK DDGGVQDNSG AKKRSRPESS APPGTKACRE KLRRDRLNER FNELCAILEP
101: GKPPKADKVA ILSDAARLLN QLRTEAQKLK QSNESLQDSI KSLKAEKSEL RDEKTRLKAE RERLEQMLKG VSHAAVAAPA PFVPHPAAAA AAPSFHPAAA
201: FAQAGKFVPY PSYPPPAAFW QWIPPTSLDT TKDPAHWPPV A

Best Arabidopsis Sequence Match ( AT5G54680.1 )
(BLAST)

001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA

Arabidopsis Description

ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.