Factsheet for VIT_14s0081g00720.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0049g00460.t01	Wine grape	cytosol, nucleus, plasma membrane	52.78	52.53
GSMUA_Achr10P...	Banana	cytosol	32.87	48.97
GSMUA_Achr7P10830_001	Banana	cytosol, nucleus, plastid	31.02	46.85
VIT_12s0059g02650.t01	Wine grape	nucleus	49.54	44.58
VIT_19s0014g05100.t01	Wine grape	nucleus	48.61	44.3
Os05t0455400-01	Rice	cytosol	29.17	42.57
GSMUA_Achr10P...	Banana	plastid	33.8	40.11
VIT_00s0532g00050.t01	Wine grape	nucleus	46.3	38.02
TraesCS1D01G280600.1	Wheat	cytosol, mitochondrion, nucleus	41.67	37.34
TraesCS1A01G281300.1	Wheat	cytosol, mitochondrion, nucleus	41.2	37.08
GSMUA_Achr2P16550_001	Banana	cytosol	39.35	36.96
EES18337	Sorghum	nucleus	41.2	36.93
TraesCS1B01G290500.1	Wheat	cytosol	41.2	36.78
HORVU1Hr1G072810.2	Barley	nucleus	40.28	36.55
Zm00001d038357_P001	Maize	cytosol, nucleus, plastid	41.2	31.23
VIT_03s0038g01790.t01	Wine grape	nucleus	31.02	20.36
VIT_04s0023g03430.t01	Wine grape	nucleus	29.63	19.63

Protein Annotations

EntrezGene:100251326	wikigene:100251326	MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	ProteinID:CCB58689
ProteinID:CCB58689.1	ncoils:Coil	UniProt:F6HVH6	EMBL:FN596256	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100251326
wikigene:LOC100251326	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF72	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002109F33	ArrayExpress:VIT_14s0081g00720	EnsemblPlantsGene:VIT_14s0081g00720	EnsemblPlants:VIT_14s0081g00720.t01	RefSeq:XP_002268590
RefSeq:XP_002268590.2	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:-:9066835..9069855

Molecular Weight (calculated)

24682.5 Da

IEP (calculated)

8.885

GRAVY (calculated)

-0.755

Length

216 amino acids

Sequence
(BLAST)

001: MDSFEDGGWD LLDYCIIEDA TSADYFWANQ SPSREINALV VDTVSTEKRC KRGREKGERC SRAESKACRE KMRREKMNDR FLDLSSLLEP GRPPKTDKSS
101: ILSDAIHVLN QLRTEARELK GKTQKLREDI RTLKAEKSEL REEKLILKAD KEKMQQRVKA MNVVPPGYVP AHPLAYQAGA NKMVGFPGYG GFQMWQWIPQ
201: TVLDTSQDHV LRPPVA

Best Arabidopsis Sequence Match ( AT4G14410.1 )
(BLAST)

001: MYPSLDDDFV SDLFCFDQSN GAELDDYTQF GVNLQTDQED TFPDFVSYGV NLQQEPDEVF SIGASQLDLS SYNGVLSLEP EQVGQQDCEV VQEEEVEINS
101: GSSGGAVKEE QEHLDDDCSR KRARTGSCSR GGGTKACRER LRREKLNERF MDLSSVLEPG RTPKTDKPAI LDDAIRILNQ LRDEALKLEE TNQKLLEEIK
201: SLKAEKNELR EEKLVLKADK EKTEQQLKSM TAPSSGFIPH IPAAFNHNKM AVYPSYGYMP MWHYMPQSVR DTSRDQELRP PAA

Arabidopsis Description

BHLH104Transcription factor bHLH104 [Source:UniProtKB/Swiss-Prot;Acc:Q8L467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.