Factsheet for TraesCS1D01G280600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G281300.1	Wheat	cytosol, mitochondrion, nucleus	98.76	99.17
TraesCS1B01G290500.1	Wheat	cytosol	98.76	98.35
HORVU1Hr1G072810.2	Barley	nucleus	93.36	94.54
EES18337	Sorghum	nucleus	85.48	85.48
Os05t0455400-01	Rice	cytosol	47.72	77.7
Zm00001d038357_P001	Maize	cytosol, nucleus, plastid	82.57	69.82
GSMUA_Achr7P10830_001	Banana	cytosol, nucleus, plastid	34.02	57.34
GSMUA_Achr10P...	Banana	cytosol	34.44	57.24
GSMUA_Achr10P...	Banana	plastid	42.32	56.04
GSMUA_Achr2P16550_001	Banana	cytosol	51.04	53.48
KRH31712	Soybean	cytosol, mitochondrion, nucleus	41.91	46.33
KRG90395	Soybean	cytosol, mitochondrion, nucleus	41.91	45.91
TraesCS7D01G304500.1	Wheat	nucleus	44.4	44.58
VIT_05s0049g00460.t01	Wine grape	cytosol, nucleus, plasma membrane	39.0	43.32
TraesCS2D01G221200.1	Wheat	nucleus	44.4	42.63
VIT_14s0081g00720.t01	Wine grape	nucleus	37.34	41.67
Solyc09g089870.2.1	Tomato	nucleus	39.0	41.59
PGSC0003DMT400044234	Potato	nucleus	38.59	41.15
TraesCS6D01G051600.2	Wheat	nucleus	41.91	40.73
Bra023751.1-P	Field mustard	nucleus	23.24	35.9
CDY49420	Canola	nucleus	35.27	30.47
AT4G14410.1	Thale cress	nucleus	35.68	30.39
CDY12770	Canola	nucleus	35.27	29.93
Bra041033.1-P	Field mustard	nucleus	35.27	29.82
AT3G23210.1	Thale cress	nucleus	36.1	27.19
Bra014923.1-P	Field mustard	nucleus	32.37	26.9
CDX77539	Canola	nucleus	31.95	26.55
CDY08983	Canola	nucleus	31.54	25.68
CDY35510	Canola	nucleus	30.71	25.17
CDX85069	Canola	nucleus	31.95	25.16
TraesCS6D01G185100.1	Wheat	cytosol	23.24	17.34

Protein Annotations

EnsemblPlants:TraesCS1D01G280600.1	EnsemblPlantsGene:TraesCS1D01G280600	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR23042	PANTHER:PTHR23042:SF78	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	MapMan:25.4.1.2	:	:

Description

No Description!

Coordinates

chr1D:+:379130944..379132872

Molecular Weight (calculated)

26114.8 Da

IEP (calculated)

7.503

GRAVY (calculated)

-0.541

Length

241 amino acids

Sequence
(BLAST)

001: MSCGGVGQGG WLLDYGLVEE EIQASDFIYM VDDPPVSSVI LGFDAPRRED AAAAAQDNSG AKKRSRPESS AQPGTKACRE KLRRDRLNER FSELCAVLEP
101: GKPPKADKVA ILSDATRLLD QLRAEAQKLK ASNESLQDSI KSLKSEKSEL RDEKTQLKAE RERLEQMLKG VSAAAAAPRQ YVPHPAAAAA PQFHPAAAYA
201: HAGKFVPAYA AGYPPPAAFW QWIPPTSLDT SKDPAHWPPV A

Best Arabidopsis Sequence Match ( AT1G51070.1 )
(BLAST)

001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVSVE VDGFLCDADV IKEPSSRKRI KTESCTGSNS KACREKQRRD RLNDKFTELS SVLEPGRTPK
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA

Arabidopsis Description

bHLH115Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7Z3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.