Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G060700.2 | Wheat | nucleus | 95.56 | 95.56 |
| TraesCS6A01G045100.1 | Wheat | nucleus | 83.87 | 85.95 |
| KXG29296 | Sorghum | cytosol, mitochondrion, nucleus | 71.77 | 77.06 |
| Os02t0116600-01 | Rice | cytosol | 71.37 | 75.0 |
| Zm00001d014995_P001 | Maize | nucleus | 70.16 | 73.73 |
| Zm00001d054038_P003 | Maize | nucleus | 68.95 | 73.71 |
| GSMUA_Achr7P04180_001 | Banana | nucleus | 52.42 | 57.52 |
| GSMUA_Achr4P05280_001 | Banana | nucleus | 52.02 | 56.33 |
| GSMUA_Achr4P05310_001 | Banana | nucleus | 52.02 | 56.33 |
| TraesCS7D01G304500.1 | Wheat | nucleus | 41.53 | 42.92 |
| TraesCS1D01G280600.1 | Wheat | cytosol, mitochondrion, nucleus | 40.73 | 41.91 |
| TraesCS2D01G221200.1 | Wheat | nucleus | 40.32 | 39.84 |
| TraesCS6D01G185100.1 | Wheat | cytosol | 25.0 | 19.2 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G051600.2 | EnsemblPlantsGene:TraesCS6D01G051600 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF66 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.2 | : | : |
Description
No Description!
Coordinates
chr6D:-:24557890..24560289
Molecular Weight (calculated)
26547.5 Da
IEP (calculated)
6.368
GRAVY (calculated)
-0.639
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDGGGGVGD PVEEFLIGGA GDGGEDSLAA FCDGGLGIED VRGGDSGLGH SNLGKRGRDE PSPSGPKSKA CREKMRRDKL NDRFLELCSV MNSGKHTGVE
101: ECSASNPGKN AKLDKASILS DATRMLTQLR GETEKLKESN VNLRETIKDL KAEKNELRDE KLSLKAEKER LEQQLKAASA APTGFAPHMP YPAAFHPAVF
201: PPFAPPYQVP ANKGAPVPAA FPGMAMWHWL PPTAMDTTQD PKLWPPNA
101: ECSASNPGKN AKLDKASILS DATRMLTQLR GETEKLKESN VNLRETIKDL KAEKNELRDE KLSLKAEKER LEQQLKAASA APTGFAPHMP YPAAFHPAVF
201: PPFAPPYQVP ANKGAPVPAA FPGMAMWHWL PPTAMDTTQD PKLWPPNA
001: MDVNLFGHDD SCSNGAELDD YTQFGVNLQT DQEDTFPDFV SYGVNLQQEP DEVFSIGASQ LDLSSYNGVL SLEPEQVGQQ DCEVVQEEEV EINSGSSGGA
101: VKEEQEHLDD DCSRKRARTG SCSRGGGTKA CRERLRREKL NERFMDLSSV LEPGRTPKTD KPAILDDAIR ILNQLRDEAL KLEETNQKLL EEIKSLKAEK
201: NELREEKLVL KADKEKTEQQ LKSMTAPSSG FIPHIPAAFN HNKMAVYPSY GYMPMWHYMP QSVRDTSRDQ ELRPPAA
101: VKEEQEHLDD DCSRKRARTG SCSRGGGTKA CRERLRREKL NERFMDLSSV LEPGRTPKTD KPAILDDAIR ILNQLRDEAL KLEETNQKLL EEIKSLKAEK
201: NELREEKLVL KADKEKTEQQ LKSMTAPSSG FIPHIPAAFN HNKMAVYPSY GYMPMWHYMP QSVRDTSRDQ ELRPPAA
Arabidopsis Description
BHLH104Transcription factor bHLH104 [Source:UniProtKB/Swiss-Prot;Acc:Q8L467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.