Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05280_001 | Banana | nucleus | 66.37 | 65.5 |
| GSMUA_Achr4P05310_001 | Banana | nucleus | 65.04 | 64.19 |
| Os02t0116600-01 | Rice | cytosol | 59.73 | 57.2 |
| KXG29296 | Sorghum | cytosol, mitochondrion, nucleus | 57.52 | 56.28 |
| Zm00001d054038_P003 | Maize | nucleus | 57.52 | 56.03 |
| Zm00001d014995_P001 | Maize | nucleus | 57.96 | 55.51 |
| TraesCS6B01G060700.2 | Wheat | nucleus | 58.41 | 53.23 |
| GSMUA_Achr10P... | Banana | cytosol | 30.09 | 53.12 |
| TraesCS6A01G045100.1 | Wheat | nucleus | 56.19 | 52.48 |
| TraesCS6D01G051600.2 | Wheat | nucleus | 57.52 | 52.42 |
| GSMUA_Achr10P... | Banana | cytosol | 30.53 | 47.59 |
| GSMUA_Achr7P10830_001 | Banana | cytosol, nucleus, plastid | 29.65 | 46.85 |
| GSMUA_Achr3P23080_001 | Banana | nucleus | 44.25 | 43.48 |
| GSMUA_Achr10P... | Banana | plastid | 34.51 | 42.86 |
| GSMUA_Achr8P33180_001 | Banana | nucleus | 42.04 | 42.04 |
| GSMUA_Achr11P... | Banana | cytosol | 30.53 | 37.7 |
| GSMUA_Achr2P16550_001 | Banana | cytosol | 36.73 | 36.09 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr7G04180_001 | EnsemblPlants:GSMUA_Achr7P04180_001 | EnsemblPlants:GSMUA_Achr7T04180_001 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0TEK8 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 |
| PANTHER:PTHR23042:SF66 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000294AC40 | InterPro:bHLH_dom | SEG:seg |
Description
basic helix-loop-helix DND-binding domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G04180_001]
Coordinates
chr7:+:3235890..3238773
Molecular Weight (calculated)
25064.8 Da
IEP (calculated)
5.754
GRAVY (calculated)
-0.624
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MESNSIDDYW VDGGGSDAEL RCAIESFCDM VPTTGVGIEE AYGVELTSLK KRARDDSTTG LKSKACREKM RRDKLNDRFS ELSLILDPGR TPKSDKASIL
101: SDAARVLVQL KADAQELKES NDKLQETIKD LKVEKNELRD EKMKLKADKE TLEQQVKAIS MAPSGFMPHP LAYHPAAAPT TFSPHVQAPS NKAAHFPAYP
201: GMAMWQWLPP AVMDTTQDSK LWPPNA
101: SDAARVLVQL KADAQELKES NDKLQETIKD LKVEKNELRD EKMKLKADKE TLEQQVKAIS MAPSGFMPHP LAYHPAAAPT TFSPHVQAPS NKAAHFPAYP
201: GMAMWQWLPP AVMDTTQDSK LWPPNA
001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
Arabidopsis Description
ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.