Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G204300.1 | Wheat | nucleus | 94.43 | 94.43 |
| TraesCS6B01G220300.1 | Wheat | nucleus | 82.97 | 89.93 |
| EES03283 | Sorghum | nucleus | 63.78 | 65.19 |
| Zm00001d044216_P002 | Maize | nucleus, plastid | 62.85 | 64.24 |
| Os02t0433600-01 | Rice | nucleus | 67.18 | 63.27 |
| Bra011658.1-P | Field mustard | cytosol | 13.31 | 51.19 |
| KRH13089 | Soybean | nucleus | 41.18 | 47.33 |
| KRH43415 | Soybean | nucleus | 40.25 | 45.94 |
| KRH24147 | Soybean | nucleus | 38.08 | 44.73 |
| VIT_03s0038g01790.t01 | Wine grape | nucleus | 43.34 | 42.55 |
| Solyc01g111130.2.1 | Tomato | nucleus | 43.03 | 41.74 |
| PGSC0003DMT400004039 | Potato | nucleus | 42.41 | 41.02 |
| CDX72574 | Canola | nucleus | 27.55 | 36.33 |
| Bra017745.1-P | Field mustard | nucleus | 26.93 | 35.51 |
| CDY47051 | Canola | nucleus | 26.63 | 35.1 |
| CDY68426 | Canola | nucleus | 26.63 | 33.86 |
| AT4G36060.3 | Thale cress | nucleus, plastid | 27.24 | 30.66 |
| TraesCS6D01G051600.2 | Wheat | nucleus | 19.2 | 25.0 |
| TraesCS7D01G304500.1 | Wheat | nucleus | 18.58 | 25.0 |
| TraesCS1D01G280600.1 | Wheat | cytosol, mitochondrion, nucleus | 17.34 | 23.24 |
| TraesCS2D01G221200.1 | Wheat | nucleus | 17.96 | 23.11 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G185100.1 | EnsemblPlantsGene:TraesCS6D01G185100 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF59 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.4 | : | : |
Description
No Description!
Coordinates
chr6D:+:237742564..237776364
Molecular Weight (calculated)
34603.3 Da
IEP (calculated)
6.076
GRAVY (calculated)
-0.714
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPQEDGFFY SHHGACHADS SQGTECKAQS SITARKVHKA DCERMRRDKL NEQFMELGTT LDPDRPRHDK ATILGDTVQM LKDLTSQVNK LKAEYSSLFE
101: EECELTKEKN ELRSEKASLK SDVDNLNNHY QQRIQMLYPC TTMEPSVLIG PPPSYPFSLQ VPIPAGAVTM HPQLQPCPFF QNQTLGAISN PCTPYMAYSQ
201: SCHAPSDQPS SQFSTPVLLS SSNRSHSPAQ GCRSKSPSLQ QASCGGRNDD FGDVATDLEL KTTGSSAPSH SEITNKDSSS DLKMKKQCIK LINGSTLIED
301: SXXXXXXXXX HTHNSSSVLA EDQ
101: EECELTKEKN ELRSEKASLK SDVDNLNNHY QQRIQMLYPC TTMEPSVLIG PPPSYPFSLQ VPIPAGAVTM HPQLQPCPFF QNQTLGAISN PCTPYMAYSQ
201: SCHAPSDQPS SQFSTPVLLS SSNRSHSPAQ GCRSKSPSLQ QASCGGRNDD FGDVATDLEL KTTGSSAPSH SEITNKDSSS DLKMKKQCIK LINGSTLIED
301: SXXXXXXXXX HTHNSSSVLA EDQ
001: MDVSARKSQK AGREKLRREK LNEHFVELGN VLDPERPKND KATILTDTVQ LLKELTSEVN KLKSEYTALT DESRELTQEK NDLREEKTSL KSDIENLNLQ
101: YQQRLRSMSP WGAAMDHTVM MAPPPSFPYP MPIAMPPGSI PMHPSMPSYT YFGNQNPSMI PAPCPTYMPY MPPNTVVEQQ SVHIPQNPGN RSREPRAKVS
201: RESRSEKAED SNEVATQLEL KTPGSTSDKD TLQRPEKTKR CKRNNNNNSI EESSHSSKCS SSPSVRDHSS SSSVAGGQKP DDAK
101: YQQRLRSMSP WGAAMDHTVM MAPPPSFPYP MPIAMPPGSI PMHPSMPSYT YFGNQNPSMI PAPCPTYMPY MPPNTVVEQQ SVHIPQNPGN RSREPRAKVS
201: RESRSEKAED SNEVATQLEL KTPGSTSDKD TLQRPEKTKR CKRNNNNNSI EESSHSSKCS SSPSVRDHSS SSSVAGGQKP DDAK
Arabidopsis Description
BHLH121Transcription factor bHLH121 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT23]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.