CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017745.1-P	Field mustard	nucleus	96.33	96.33
CDX72574	Canola	nucleus	94.69	94.69
CDY68426	Canola	nucleus	72.24	69.69
AT4G36060.3	Thale cress	nucleus, plastid	58.37	49.83
KRH13089	Soybean	nucleus	42.04	36.65
KRH24147	Soybean	nucleus	40.41	36.0
KRH43415	Soybean	nucleus	40.82	35.34
Solyc01g111130.2.1	Tomato	nucleus	45.31	33.33
PGSC0003DMT400004039	Potato	nucleus	45.31	33.23
EES03283	Sorghum	nucleus	41.63	32.28
VIT_03s0038g01790.t01	Wine grape	nucleus	43.27	32.22
Zm00001d044216_P002	Maize	nucleus, plastid	40.0	31.01
CDY42214	Canola	mitochondrion, nucleus	41.22	30.24
TraesCS6B01G220300.1	Wheat	nucleus	35.1	28.86
TraesCS6A01G204300.1	Wheat	nucleus	37.55	28.48
CDY33424	Canola	nucleus	42.04	28.22
Os02t0433600-01	Rice	nucleus	38.37	27.41
TraesCS6D01G185100.1	Wheat	cytosol	35.1	26.63
CDY43028	Canola	nucleus	21.63	22.27
CDY71937	Canola	cytosol, nucleus	19.59	21.92
CDY43809	Canola	nucleus	21.22	21.85
CDY35576	Canola	nucleus	20.0	21.49
CDY42475	Canola	nucleus	20.41	21.46
CDY47456	Canola	nucleus	20.41	21.46
CDY28758	Canola	nucleus	20.0	20.85
CDY41004	Canola	nucleus	20.0	20.85
CDY49420	Canola	nucleus	20.0	17.56
CDY12770	Canola	nucleus	19.59	16.9
CDX77539	Canola	nucleus	20.0	16.9
CDY35510	Canola	nucleus	19.59	16.33
CDY08983	Canola	nucleus	19.18	15.88
CDX85069	Canola	nucleus	19.18	15.36

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.4	Gene3D:4.10.280.10	GO:A0A078IB46	UniProt:A0A078IB46	EnsemblPlants:CDY47051
ProteinID:CDY47051	ProteinID:CDY47051.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00086660001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF73	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EE1161
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BnaAnng08390DBnaAnng08390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IB46]

Coordinates

chrLK032695:+:126966..128133

Molecular Weight (calculated)

27331.3 Da

IEP (calculated)

6.159

GRAVY (calculated)

-0.704

Length

245 amino acids

Sequence
(BLAST)

001: MEQTKKLKTS SEFSLSDESS ASSSSIRPEK MVEVKKEPVS SLKKADRERI RRDKLNEQFL ELGNALDPNR PKSDKASILI DTLQTLKDLM TQVDRLKAEH
101: VTLSQESREL IQEKSELKEE KTSLKSDIDI LNAQYQHKIR TMVPWIPHYT YPVPLVAITQ GPVSTLPFPL YDTRNPAPLP SPCSTFMPCS AEQKDDAGLE
201: LELKIHASSS GQEDVYGKEK KGNLTNTASS SNSYSSSQAV SDGVM

Best Arabidopsis Sequence Match ( AT4G36060.2 )
(BLAST)

001: MAVSCLFIVS SNYRGAEMVV EVKKEAVCSQ KAEREKLRRD KLKEQFLELG NALDPNRPKS DKASVLTDTI QMLKDVMNQV DRLKAEYETL SQESRELIQE
101: KSELREEKAT LKSDIEILNA QYQHRIKTMV PWVPHYSYHI PFVAITQGQS SFIPYSASVN PLTEQQASVQ QHSSSSADAS MKQDSKIKPL DLDLMMNSNH
201: SGQGNDQKDD VRLKLELKIH ASSLAQQDVS GKEKKVSLTT TASSSNSYSL SQAVQDSSPG TVNDMLKP

Arabidopsis Description

bHLH11basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT4G36060]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.