CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42214	Canola	mitochondrion, nucleus	82.19	89.82
AT3G19860.2	Thale cress	nucleus	77.81	84.27
CDX72574	Canola	nucleus	29.04	43.27
CDY47051	Canola	nucleus	28.22	42.04
CDY68426	Canola	nucleus	28.77	41.34
CDY42475	Canola	nucleus	20.0	31.33
CDY43028	Canola	nucleus	20.27	31.09
CDY41004	Canola	nucleus	19.45	30.21
CDY47456	Canola	nucleus	19.18	30.04
CDY43809	Canola	nucleus	19.45	29.83
CDY28758	Canola	nucleus	18.9	29.36
CDY71937	Canola	cytosol, nucleus	16.44	27.4
CDY35576	Canola	nucleus	16.99	27.19
CDY35510	Canola	nucleus	18.9	23.47
CDY49420	Canola	nucleus	17.81	23.3
CDY08983	Canola	nucleus	18.63	22.97
CDY12770	Canola	nucleus	17.53	22.54
CDX77539	Canola	nucleus	17.81	22.41
CDX85069	Canola	nucleus	17.53	20.91

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.4	Gene3D:4.10.280.10	GO:A0A078H7F9	UniProt:A0A078H7F9	EnsemblPlants:CDY33424
ProteinID:CDY33424	ProteinID:CDY33424.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00054328001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF59	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EEBE33
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BnaC01g33010DBnaC01g33010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7F9]

Coordinates

chrLK032314:-:63884..65949

Molecular Weight (calculated)

40745.3 Da

IEP (calculated)

9.110

GRAVY (calculated)

-0.861

Length

365 amino acids

Sequence
(BLAST)

001: MSLQKKKKKI ERGASTNEQQ ESFFVEPCLC LHLNRICPLP SILPAGESVL SLPPIDRLQL TSSSLGFRSP LAKLGASSIK FSEVMDVSAR KSQKAGREKL
101: RREKLNEHFV ELGNVLDPDR PKNDKATILT DTLQLLKELT SEVNKLKSEY TALTDESREL TQEKNDLREE KTSLKSDIEN LNLQYQQRLR SMSPWGAAMD
201: HTVMMAPPPS FPYPMPMAMP PGSIPMHHPP MPSYTYFGNQ NPSMMPAPYM PYMPPNTVVE QQSVHIPQNT RSREPRAKVS RESRSDKAED SNDVATQLEL
301: KTPGSTSDKD TSQRPEKSKR CKRNSNNNNS VEESSHSSKC SSSPSVRDNT SSSSVAGGLK PDDAK

Best Arabidopsis Sequence Match ( AT3G19860.2 )
(BLAST)

001: MGIRENGIML VSRERERARR LENRESIFAE PPCLLLAHRI SPSPSILPAE EEVMDVSARK SQKAGREKLR REKLNEHFVE LGNVLDPERP KNDKATILTD
101: TVQLLKELTS EVNKLKSEYT ALTDESRELT QEKNDLREEK TSLKSDIENL NLQYQQRLRS MSPWGAAMDH TVMMAPPPSF PYPMPIAMPP GSIPMHPSMP
201: SYTYFGNQNP SMIPAPCPTY MPYMPPNTVV EQQSVHIPQN PGNRSREPRA KVSRESRSEK AEDSNEVATQ LELKTPGSTS DKDTLQRPEK TKRCKRNNNN
301: NSIEESSHSS KCSSSPSVRD HSSSSSVAGG QKPDDAK

Arabidopsis Description

BHLH121Transcription factor bHLH121 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT23]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.