CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22597
CDY41739
CDY43007
CDY60257
CDY67026

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54680.1	CDY22597	AT1G32230.1	19548978
AT5G54680.1	CDY41739	AT1G32230.1	19548978
AT5G54680.1	CDY43007	AT1G32230.1	19548978
AT5G54680.1	CDY60257	AT1G32230.1	19548978
AT5G54680.1	CDY67026	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42475	Canola	nucleus	95.71	95.71
CDY41004	Canola	nucleus	93.13	92.34
AT5G54680.1	Thale cress	nucleus	92.7	92.31
CDY28758	Canola	nucleus	92.7	91.91
CDY43809	Canola	nucleus	89.7	87.82
CDY43028	Canola	nucleus	89.27	87.39
VIT_19s0014g05100.t01	Wine grape	nucleus	70.39	69.2
KRH27110	Soybean	nucleus	69.1	69.1
KRH22229	Soybean	nucleus	69.1	68.8
PGSC0003DMT400049592	Potato	nucleus	67.81	67.81
KRH55616	Soybean	cytosol, nucleus, plastid	68.67	67.8
Solyc07g064040.2.1	Tomato	nucleus	66.09	66.09
Solyc10g006510.2.1	Tomato	nucleus	65.24	65.8
KRH25888	Soybean	cytosol, nucleus, plastid	66.52	65.68
PGSC0003DMT400037405	Potato	nucleus	64.81	65.37
CDY71937	Canola	cytosol, nucleus	60.09	63.93
CDY35576	Canola	nucleus	60.94	62.28
CDY49420	Canola	nucleus	41.2	34.41
CDY12770	Canola	nucleus	41.2	33.8
CDX77539	Canola	nucleus	40.77	32.76
CDY08983	Canola	nucleus	39.48	31.08
CDY35510	Canola	nucleus	38.63	30.61
CDX85069	Canola	nucleus	39.91	30.39
CDX72574	Canola	nucleus	22.75	21.63
CDY47051	Canola	nucleus	21.46	20.41
CDY42214	Canola	mitochondrion, nucleus	29.18	20.36
CDY68426	Canola	nucleus	21.89	20.08
CDY33424	Canola	nucleus	30.04	19.18

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	GO:A0A078IC90	UniProt:A0A078IC90	EnsemblPlants:CDY47456
ProteinID:CDY47456	ProteinID:CDY47456.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00087503001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF78	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EDD6A6
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BnaC09g31010DBnaC09g31010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IC90]

Coordinates

chrLK032717:-:156976..158991

Molecular Weight (calculated)

25445.2 Da

IEP (calculated)

9.137

GRAVY (calculated)

-0.649

Length

233 amino acids

Sequence
(BLAST)

001: MVSPENANWI SELIDADYGS FTIQGPGFSW PVHQQPIGVS SVGVDGSAGN SEATKEPVSK KRARCDSSSA TSSKACREKQ RRDRLNDKFT ELSVILEPGN
101: PPKTDKAAIL VDAVRMVTQL RGEAQKLKDS NSSLQGKINE LKTEKNELRD EKQRLKTEKE KLEQQLKAMN APPQPSFFPG PPMMPTAFAS AQGQAPGNKM
201: VPVISYPGVA MWQFMPPASV DTSQDHVLRP PVA

Best Arabidopsis Sequence Match ( AT5G54680.1 )
(BLAST)

001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA

Arabidopsis Description

ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.