Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra041033.1-P | Field mustard | nucleus | 99.28 | 97.19 |
| CDY12770 | Canola | nucleus | 96.77 | 95.07 |
| AT4G14410.1 | Thale cress | nucleus | 82.08 | 80.92 |
| CDX77539 | Canola | nucleus | 60.93 | 58.62 |
| CDX85069 | Canola | nucleus | 64.16 | 58.5 |
| KRG90395 | Soybean | cytosol, mitochondrion, nucleus | 45.16 | 57.27 |
| CDY08983 | Canola | nucleus | 60.22 | 56.76 |
| CDY35510 | Canola | nucleus | 59.5 | 56.46 |
| KRH31712 | Soybean | cytosol, mitochondrion, nucleus | 44.09 | 56.42 |
| VIT_05s0049g00460.t01 | Wine grape | cytosol, nucleus, plasma membrane | 43.37 | 55.76 |
| Solyc09g089870.2.1 | Tomato | nucleus | 45.16 | 55.75 |
| PGSC0003DMT400044234 | Potato | nucleus | 43.73 | 53.98 |
| GSMUA_Achr7P10830_001 | Banana | cytosol, nucleus, plastid | 23.3 | 45.45 |
| GSMUA_Achr10P... | Banana | cytosol | 23.3 | 44.83 |
| CDY71937 | Canola | cytosol, nucleus | 33.69 | 42.92 |
| CDY28758 | Canola | nucleus | 35.84 | 42.55 |
| CDY41004 | Canola | nucleus | 35.13 | 41.7 |
| CDY35576 | Canola | nucleus | 33.69 | 41.23 |
| CDY47456 | Canola | nucleus | 34.41 | 41.2 |
| CDY42475 | Canola | nucleus | 34.41 | 41.2 |
| CDY43809 | Canola | nucleus | 34.41 | 40.34 |
| CDY43028 | Canola | nucleus | 34.05 | 39.92 |
| GSMUA_Achr10P... | Banana | plastid | 25.81 | 39.56 |
| Os05t0455400-01 | Rice | cytosol | 20.07 | 37.84 |
| EES18337 | Sorghum | nucleus | 32.62 | 37.76 |
| GSMUA_Achr2P16550_001 | Banana | cytosol | 30.11 | 36.52 |
| HORVU1Hr1G072810.2 | Barley | nucleus | 30.82 | 36.13 |
| TraesCS1A01G281300.1 | Wheat | cytosol, mitochondrion, nucleus | 30.82 | 35.83 |
| TraesCS1B01G290500.1 | Wheat | cytosol | 30.82 | 35.54 |
| TraesCS1D01G280600.1 | Wheat | cytosol, mitochondrion, nucleus | 30.47 | 35.27 |
| Zm00001d038357_P001 | Maize | cytosol, nucleus, plastid | 32.62 | 31.93 |
| CDX72574 | Canola | nucleus | 18.64 | 21.22 |
| CDY47051 | Canola | nucleus | 17.56 | 20.0 |
| CDY42214 | Canola | mitochondrion, nucleus | 23.3 | 19.46 |
| CDY68426 | Canola | nucleus | 16.85 | 18.5 |
| CDY33424 | Canola | nucleus | 23.3 | 17.81 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | GO:A0A078IEU2 | UniProt:A0A078IEU2 | EnsemblPlants:CDY49420 |
| ProteinID:CDY49420 | ProteinID:CDY49420.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00092995001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF72 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE82C5 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaCnng17300DBnaCnng17300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEU2]
Coordinates
chrLK032831:+:116406..118051
Molecular Weight (calculated)
31548.6 Da
IEP (calculated)
4.466
GRAVY (calculated)
-0.890
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPSLDDEDF VSDFFCFDQS SNGAELDDYT QFGVDLQPDQ AGTFPDFGSY GVNLQNEPQQ VFSIGDLTSY EPGQFHNFGG PNDCGTVQED EVVVNSSSSG
101: GAVKQEQEHV DEECSRKRGR TGSCVRPGGT KACRERLRRE KLNEKFMDLS SVLEPGRTPK TDKPAILDDA IRVLNQLRDE AHELEETNQK LLEEIKSLKA
201: EKNELREEKQ ALKAEKEKTE QQLKSMMVPS TGFMPQIPTP FNQNKMAVYP SYGYMPMWHY LPQSVRDTSR DQELRPPAA
101: GAVKQEQEHV DEECSRKRGR TGSCVRPGGT KACRERLRRE KLNEKFMDLS SVLEPGRTPK TDKPAILDDA IRVLNQLRDE AHELEETNQK LLEEIKSLKA
201: EKNELREEKQ ALKAEKEKTE QQLKSMMVPS TGFMPQIPTP FNQNKMAVYP SYGYMPMWHY LPQSVRDTSR DQELRPPAA
001: MYPSLDDDFV SDLFCFDQSN GAELDDYTQF GVNLQTDQED TFPDFVSYGV NLQQEPDEVF SIGASQLDLS SYNGVLSLEP EQVGQQDCEV VQEEEVEINS
101: GSSGGAVKEE QEHLDDDCSR KRARTGSCSR GGGTKACRER LRREKLNERF MDLSSVLEPG RTPKTDKPAI LDDAIRILNQ LRDEALKLEE TNQKLLEEIK
201: SLKAEKNELR EEKLVLKADK EKTEQQLKSM TAPSSGFIPH IPAAFNHNKM AVYPSYGYMP MWHYMPQSVR DTSRDQELRP PAA
101: GSSGGAVKEE QEHLDDDCSR KRARTGSCSR GGGTKACRER LRREKLNERF MDLSSVLEPG RTPKTDKPAI LDDAIRILNQ LRDEALKLEE TNQKLLEEIK
201: SLKAEKNELR EEKLVLKADK EKTEQQLKSM TAPSSGFIPH IPAAFNHNKM AVYPSYGYMP MWHYMPQSVR DTSRDQELRP PAA
Arabidopsis Description
BHLH104Transcription factor bHLH104 [Source:UniProtKB/Swiss-Prot;Acc:Q8L467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.