Factsheet for PGSC0003DMT400044234

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g089870.2.1	Tomato	nucleus	94.69	94.69
KRG90395	Soybean	cytosol, mitochondrion, nucleus	59.73	61.36
KRH31712	Soybean	cytosol, mitochondrion, nucleus	58.41	60.55
VIT_05s0049g00460.t01	Wine grape	cytosol, nucleus, plasma membrane	52.65	54.84
Bra023751.1-P	Field mustard	nucleus	36.73	53.21
GSMUA_Achr10P...	Banana	cytosol	29.65	46.21
GSMUA_Achr7P10830_001	Banana	cytosol, nucleus, plastid	28.32	44.76
AT4G14410.1	Thale cress	nucleus	54.87	43.82
CDY49420	Canola	nucleus	53.98	43.73
Bra041033.1-P	Field mustard	nucleus	53.98	42.81
CDY12770	Canola	nucleus	53.54	42.61
PGSC0003DMT400049592	Potato	nucleus	42.92	41.63
PGSC0003DMT400067294	Potato	nucleus	44.69	41.39
Bra014923.1-P	Field mustard	nucleus	52.65	41.03
CDX77539	Canola	nucleus	52.65	41.03
PGSC0003DMT400037405	Potato	nucleus	41.59	40.69
GSMUA_Achr10P...	Banana	plastid	32.74	40.66
TraesCS1B01G290500.1	Wheat	cytosol	41.59	38.84
TraesCS1A01G281300.1	Wheat	cytosol, mitochondrion, nucleus	41.15	38.75
HORVU1Hr1G072810.2	Barley	nucleus	40.71	38.66
TraesCS1D01G280600.1	Wheat	cytosol, mitochondrion, nucleus	41.15	38.59
EES18337	Sorghum	nucleus	41.15	38.59
GSMUA_Achr2P16550_001	Banana	cytosol	38.94	38.26
Os05t0455400-01	Rice	cytosol	24.78	37.84
CDY08983	Canola	nucleus	49.12	37.5
PGSC0003DMT400055907	Potato	nucleus	38.05	37.39
CDX85069	Canola	nucleus	50.44	37.25
CDY35510	Canola	nucleus	48.23	37.07
AT3G23210.1	Thale cress	nucleus	52.21	36.88
Zm00001d038357_P001	Maize	cytosol, nucleus, plastid	41.15	32.63
PGSC0003DMT400004039	Potato	nucleus	27.88	18.86

Protein Annotations

EntrezGene:102594250	MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:M1BFV2	PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400017181	PGSC:PGSC0003DMG400017181	EnsemblPlants:PGSC0003DMT400044234	PFscan:PS50888
PANTHER:PTHR23042	PANTHER:PTHR23042:SF72	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000295FAE4	RefSeq:XP_006354504.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017181]

Coordinates

chr9:-:56172619..56177726

Molecular Weight (calculated)

26226.0 Da

IEP (calculated)

4.792

GRAVY (calculated)

-0.832

Length

226 amino acids

Sequence
(BLAST)

001: MDQFDSFQDV NWDLIDINSF IDEEAPIDFF WNDQTQNLRT VAELEAPLSS AAFQECIETE YPRKRGRNES CSKQGNKACR ERLRREKLNE RFSDLCSVLE
101: PGRPVKTDKM AILGDAIRVL NQLKTESEEY KEMNQKLMEE IKTLKEEKNE LREEKLALRA DKERMEQELK ATASPASFIP PHPAAYQPAV NKMAVFPSYG
201: YVPMWQYLQP SSRDTSQDHM LRPPAA

Best Arabidopsis Sequence Match ( AT4G14410.2 )
(BLAST)

001: MDVNLFGHDD SCSNGAELDD YTQFGVNLQT DQEDTFPDFV SYGVNLQQEP DEVFSIGASQ LDLSSYNGVL SLEPEQVGQQ DCEVVQEEEV EINSGSSGGA
101: VKEEQEHLDD DCSRKRARTG SCSRGGGTKA CRERLRREKL NERFMDLSSV LEPGRTPKTD KPAILDDAIR ILNQLRDEAL KLEETNQKLL EEIKSLKAEK
201: NELREEKLVL KADKEKTEQQ LKSMTAPSSG FIPHIPAAFN HNKMAVYPSY GYMPMWHYMP QSVRDTSRDQ ELRPPAA

Arabidopsis Description

BHLH104Transcription factor bHLH104 [Source:UniProtKB/Swiss-Prot;Acc:Q8L467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.