Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra023751.1-P | Field mustard | nucleus | 38.12 | 78.21 |
CDX85069 | Canola | nucleus | 71.88 | 75.16 |
Bra014923.1-P | Field mustard | nucleus | 64.06 | 70.69 |
CDX77539 | Canola | nucleus | 64.06 | 70.69 |
CDY08983 | Canola | nucleus | 65.31 | 70.61 |
CDY35510 | Canola | nucleus | 64.38 | 70.07 |
AT4G14410.1 | Thale cress | nucleus | 57.5 | 65.02 |
Solyc09g089870.2.1 | Tomato | nucleus | 37.81 | 53.54 |
KRG90395 | Soybean | cytosol, mitochondrion, nucleus | 36.56 | 53.18 |
PGSC0003DMT400044234 | Potato | nucleus | 36.88 | 52.21 |
VIT_05s0049g00460.t01 | Wine grape | cytosol, nucleus, plasma membrane | 34.69 | 51.15 |
KRH31712 | Soybean | cytosol, mitochondrion, nucleus | 34.69 | 50.92 |
GSMUA_Achr7P10830_001 | Banana | cytosol, nucleus, plastid | 20.31 | 45.45 |
GSMUA_Achr10P... | Banana | cytosol | 20.31 | 44.83 |
AT5G54680.1 | Thale cress | nucleus | 31.88 | 43.59 |
GSMUA_Achr10P... | Banana | plastid | 22.81 | 40.11 |
Os05t0455400-01 | Rice | cytosol | 18.44 | 39.86 |
HORVU1Hr1G072810.2 | Barley | nucleus | 27.81 | 37.4 |
EES18337 | Sorghum | nucleus | 28.12 | 37.34 |
TraesCS1A01G281300.1 | Wheat | cytosol, mitochondrion, nucleus | 27.5 | 36.67 |
TraesCS1B01G290500.1 | Wheat | cytosol | 27.5 | 36.36 |
TraesCS1D01G280600.1 | Wheat | cytosol, mitochondrion, nucleus | 27.19 | 36.1 |
GSMUA_Achr2P16550_001 | Banana | cytosol | 25.94 | 36.09 |
AT1G51070.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 30.62 | 33.56 |
Zm00001d038357_P001 | Maize | cytosol, nucleus, plastid | 28.75 | 32.28 |
AT3G19860.2 | Thale cress | nucleus | 19.38 | 18.4 |
AT4G36060.3 | Thale cress | nucleus, plastid | 15.0 | 16.72 |
Protein Annotations
MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | EntrezGene:821899 | UniProt:A0A178VFY4 | ProteinID:AEE76735.1 |
EMBL:AF488573 | ArrayExpress:AT3G23210 | EnsemblPlantsGene:AT3G23210 | RefSeq:AT3G23210 | TAIR:AT3G23210 | RefSeq:AT3G23210-TAIR-G |
EnsemblPlants:AT3G23210.1 | TAIR:AT3G23210.1 | EMBL:AY099674 | EMBL:AY128853 | Unigene:At.6338 | ProteinID:BAA95734.1 |
ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010030 | GO:GO:0019725 | GO:GO:0043565 | GO:GO:0046983 |
GO:GO:0071333 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_001327796.1 | RefSeq:NP_188962.2 |
ProteinID:OAP05229.1 | PFAM:PF00010 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF72 | UniProt:Q9LTC7 | SMART:SM00353 | SUPFAM:SSF47459 |
UniParc:UPI00000A823E | Symbol:bHLH34 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
BHLH34Transcription factor bHLH34 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC7]
Coordinates
chr3:-:8283003..8285081
Molecular Weight (calculated)
35578.7 Da
IEP (calculated)
4.772
GRAVY (calculated)
-0.693
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPSIEDDDD LLAALCFDQS NGVEDPYGYM QTNEDNIFQD FGSCGVNLMQ PQQEQFDSFN GNLEQVCSSF RGGNNGVVYS SSIGSAQLDL AASFSGVLQQ
101: ETHQVCGFRG QNDDSAVPHL QQQQGQVFSG VVEINSSSSV GAVKEEFEEE CSGKRRRTGS CSKPGTKACR EKLRREKLND KFMDLSSVLE PGRTPKTDKS
201: AILDDAIRVV NQLRGEAHEL QETNQKLLEE IKSLKADKNE LREEKLVLKA EKEKMEQQLK SMVVPSPGFM PSQHPAAFHS HKMAVAYPYG YYPPNMPMWS
301: PLPPADRDTS RDLKNLPPVA
101: ETHQVCGFRG QNDDSAVPHL QQQQGQVFSG VVEINSSSSV GAVKEEFEEE CSGKRRRTGS CSKPGTKACR EKLRREKLND KFMDLSSVLE PGRTPKTDKS
201: AILDDAIRVV NQLRGEAHEL QETNQKLLEE IKSLKADKNE LREEKLVLKA EKEKMEQQLK SMVVPSPGFM PSQHPAAFHS HKMAVAYPYG YYPPNMPMWS
301: PLPPADRDTS RDLKNLPPVA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.