Factsheet for AT3G19860.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42214	Canola	mitochondrion, nucleus	86.65	87.43
CDY33424	Canola	nucleus	84.27	77.81
AT5G54680.1	Thale cress	nucleus	21.07	30.34
AT4G36060.3	Thale cress	nucleus, plastid	25.82	30.31
AT4G14410.1	Thale cress	nucleus	19.29	22.97
AT1G51070.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	17.51	20.21
AT3G23210.1	Thale cress	nucleus	18.4	19.38

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.4	Gene3D:4.10.280.10	EntrezGene:821523	ProteinID:AEE76300.1	ProteinID:AEE76301.1
EMBL:AF488633	EMBL:AK317507	ArrayExpress:AT3G19860	EnsemblPlantsGene:AT3G19860	RefSeq:AT3G19860	TAIR:AT3G19860
RefSeq:AT3G19860-TAIR-G	EnsemblPlants:AT3G19860.2	TAIR:AT3G19860.2	EMBL:AY065107	EMBL:AY081703	UniProt:B9DHF5
ProteinID:BAB01300.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
RefSeq:NP_001030729.1	RefSeq:NP_188620.1	PFAM:PF00010	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50888
PANTHER:PTHR23042	PANTHER:PTHR23042:SF59	UniProt:Q9LT23	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00000A9EDE
Symbol:bHLH121	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

BHLH121Transcription factor bHLH121 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT23]

Coordinates

chr3:+:6903757..6906207

Molecular Weight (calculated)

37921.8 Da

IEP (calculated)

7.988

GRAVY (calculated)

-0.964

Length

337 amino acids

Sequence
(BLAST)

001: MGIRENGIML VSRERERARR LENRESIFAE PPCLLLAHRI SPSPSILPAE EEVMDVSARK SQKAGREKLR REKLNEHFVE LGNVLDPERP KNDKATILTD
101: TVQLLKELTS EVNKLKSEYT ALTDESRELT QEKNDLREEK TSLKSDIENL NLQYQQRLRS MSPWGAAMDH TVMMAPPPSF PYPMPIAMPP GSIPMHPSMP
201: SYTYFGNQNP SMIPAPCPTY MPYMPPNTVV EQQSVHIPQN PGNRSREPRA KVSRESRSEK AEDSNEVATQ LELKTPGSTS DKDTLQRPEK TKRCKRNNNN
301: NSIEESSHSS KCSSSPSVRD HSSSSSVAGG QKPDDAK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.