Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42475 | Canola | nucleus | 95.3 | 95.71 |
| CDY41004 | Canola | nucleus | 95.73 | 95.32 |
| Bra002964.1-P | Field mustard | nucleus | 94.87 | 95.28 |
| CDY28758 | Canola | nucleus | 94.87 | 94.47 |
| Bra022738.1-P | Field mustard | nucleus | 94.44 | 94.04 |
| CDY47456 | Canola | nucleus | 92.31 | 92.7 |
| CDY43809 | Canola | nucleus | 91.88 | 90.34 |
| CDY43028 | Canola | nucleus | 91.88 | 90.34 |
| Bra029011.1-P | Field mustard | nucleus | 91.03 | 89.5 |
| VIT_19s0014g05100.t01 | Wine grape | nucleus | 73.5 | 72.57 |
| PGSC0003DMT400049592 | Potato | nucleus | 71.37 | 71.67 |
| KRH55616 | Soybean | cytosol, nucleus, plastid | 71.37 | 70.76 |
| Solyc07g064040.2.1 | Tomato | nucleus | 69.66 | 69.96 |
| KRH22229 | Soybean | nucleus | 69.66 | 69.66 |
| KRH27110 | Soybean | nucleus | 69.23 | 69.53 |
| Solyc10g006510.2.1 | Tomato | nucleus | 67.52 | 68.4 |
| KRH25888 | Soybean | cytosol, nucleus, plastid | 68.8 | 68.22 |
| PGSC0003DMT400037405 | Potato | nucleus | 66.67 | 67.53 |
| AT1G51070.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 60.26 | 48.29 |
| AT4G14410.1 | Thale cress | nucleus | 40.6 | 33.57 |
| AT3G23210.1 | Thale cress | nucleus | 43.59 | 31.88 |
| AT3G19860.2 | Thale cress | nucleus | 30.34 | 21.07 |
| AT4G36060.3 | Thale cress | nucleus, plastid | 21.79 | 17.77 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | EntrezGene:835557 | UniProt:A0A178UAU8 | ProteinID:AED96526.1 |
| EMBL:AF488629 | ArrayExpress:AT5G54680 | EnsemblPlantsGene:AT5G54680 | RefSeq:AT5G54680 | TAIR:AT5G54680 | RefSeq:AT5G54680-TAIR-G |
| EnsemblPlants:AT5G54680.1 | TAIR:AT5G54680.1 | EMBL:AY054585 | EMBL:AY086197 | Unigene:At.9639 | ProteinID:BAB09934.1 |
| EMBL:BT002189 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019748 | GO:GO:0019760 | GO:GO:0043565 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| Symbol:ILR3 | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_200279.1 | ProteinID:OAO90384.1 | PFAM:PF00010 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50888 | PANTHER:PTHR23042 |
| PANTHER:PTHR23042:SF78 | UniProt:Q9FH37 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00000AC3CD | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
Coordinates
chr5:+:22216934..22219274
Molecular Weight (calculated)
25489.3 Da
IEP (calculated)
8.836
GRAVY (calculated)
-0.675
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.