Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011658.1-P | Field mustard | cytosol | 22.3 | 76.19 |
| Bra017745.1-P | Field mustard | nucleus | 50.17 | 58.78 |
| CDY47051 | Canola | nucleus | 49.83 | 58.37 |
| CDX72574 | Canola | nucleus | 49.48 | 57.96 |
| CDY68426 | Canola | nucleus | 47.39 | 53.54 |
| KRH43415 | Soybean | nucleus | 33.1 | 33.57 |
| KRH13089 | Soybean | nucleus | 32.4 | 33.1 |
| KRH24147 | Soybean | nucleus | 30.31 | 31.64 |
| PGSC0003DMT400004039 | Potato | nucleus | 35.89 | 30.84 |
| Solyc01g111130.2.1 | Tomato | nucleus | 35.54 | 30.63 |
| VIT_03s0038g01790.t01 | Wine grape | nucleus | 34.84 | 30.4 |
| TraesCS6B01G220300.1 | Wheat | nucleus | 31.36 | 30.2 |
| Zm00001d044216_P002 | Maize | nucleus, plastid | 32.4 | 29.43 |
| EES03283 | Sorghum | nucleus | 32.06 | 29.11 |
| Os02t0433600-01 | Rice | nucleus | 33.1 | 27.7 |
| TraesCS6A01G204300.1 | Wheat | nucleus | 31.01 | 27.55 |
| TraesCS6D01G185100.1 | Wheat | cytosol | 30.66 | 27.24 |
| AT3G19860.2 | Thale cress | nucleus | 30.31 | 25.82 |
| AT5G54680.1 | Thale cress | nucleus | 17.77 | 21.79 |
| AT4G14410.1 | Thale cress | nucleus | 17.42 | 17.67 |
| AT1G51070.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 16.03 | 15.75 |
| AT3G23210.1 | Thale cress | nucleus | 16.72 | 15.0 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.4 | Gene3D:4.10.280.10 | EntrezGene:829762 | UniProt:A0A1P8B8S6 | ProteinID:ANM67988.1 |
| ArrayExpress:AT4G36060 | EnsemblPlantsGene:AT4G36060 | RefSeq:AT4G36060 | TAIR:AT4G36060 | RefSeq:AT4G36060-TAIR-G | EnsemblPlants:AT4G36060.3 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_001329776.1 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF73 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0008492CCC |
| Symbol:bHLH11 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
bHLH11basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT4G36060]
Coordinates
chr4:+:17055226..17056782
Molecular Weight (calculated)
32542.3 Da
IEP (calculated)
6.606
GRAVY (calculated)
-0.728
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQPMKPKTC SESDFADDSS ASSSSSSGQN LRGAEMVVEV KKEAVCSQKA EREKLRRDKL KEQFLELGNA LDPNRPKSDK ASVLTDTIQM LKDVMNQVDR
101: LKAEYETLSQ ESRELIQEKS ELREEKATLK SDIEILNAQY QHRIKTMVPW VPHYSYHIPF VAITQGQSSF IPYSASVNPL TEQQASVQQH SSSSADASMK
201: QDSKIKPLDL DLMMNSNHSG QGNDQKDDVR LKLELKIHAS SLAQQVSDLF NSFANKLFHG LTRVYFHAGC FWKREESKLD NHCKLIE
101: LKAEYETLSQ ESRELIQEKS ELREEKATLK SDIEILNAQY QHRIKTMVPW VPHYSYHIPF VAITQGQSSF IPYSASVNPL TEQQASVQQH SSSSADASMK
201: QDSKIKPLDL DLMMNSNHSG QGNDQKDDVR LKLELKIHAS SLAQQVSDLF NSFANKLFHG LTRVYFHAGC FWKREESKLD NHCKLIE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.