Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68426 | Canola | nucleus | 85.71 | 28.35 |
| Bra017745.1-P | Field mustard | nucleus | 80.95 | 27.76 |
| AT4G36060.3 | Thale cress | nucleus, plastid | 76.19 | 22.3 |
| KRH43415 | Soybean | nucleus | 58.33 | 17.31 |
| KRH13089 | Soybean | nucleus | 55.95 | 16.73 |
| KRH24147 | Soybean | nucleus | 52.38 | 16.0 |
| EES03283 | Sorghum | nucleus | 59.52 | 15.82 |
| Bra030459.1-P | Field mustard | nucleus | 41.67 | 15.56 |
| Zm00001d044216_P002 | Maize | nucleus, plastid | 58.33 | 15.51 |
| VIT_03s0038g01790.t01 | Wine grape | nucleus | 60.71 | 15.5 |
| Solyc01g111130.2.1 | Tomato | nucleus | 60.71 | 15.32 |
| PGSC0003DMT400004039 | Potato | nucleus | 60.71 | 15.27 |
| TraesCS6B01G220300.1 | Wheat | nucleus | 52.38 | 14.77 |
| Os02t0433600-01 | Rice | nucleus | 57.14 | 13.99 |
| TraesCS6A01G204300.1 | Wheat | nucleus | 53.57 | 13.93 |
| TraesCS6D01G185100.1 | Wheat | cytosol | 51.19 | 13.31 |
| Bra029011.1-P | Field mustard | nucleus | 36.9 | 13.03 |
| Bra002964.1-P | Field mustard | nucleus | 34.52 | 12.45 |
| Bra022738.1-P | Field mustard | nucleus | 34.52 | 12.34 |
| Bra023751.1-P | Field mustard | nucleus | 20.24 | 10.9 |
| Bra041033.1-P | Field mustard | nucleus | 36.9 | 10.88 |
| Bra014923.1-P | Field mustard | nucleus | 35.71 | 10.34 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EnsemblPlantsGene:Bra011658 | EnsemblPlants:Bra011658.1 | EnsemblPlants:Bra011658.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | UniProt:M4D5A1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF73 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002546D70 | InterPro:bHLH_dom | : | : |
Description
AT4G36060 (E=1e-028) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA01:-:1228939..1229270
Molecular Weight (calculated)
9799.7 Da
IEP (calculated)
4.782
GRAVY (calculated)
-0.839
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MVEVKEEPVS SRKIQKAERE KIRRDKLKEQ FLELGDALDP NRPKSDKTSI IIDTIQILKD LMTQVDRLKA EYVALSEESR EVDD
001: MAVSCLFIVS SNYRGAEMVV EVKKEAVCSQ KAEREKLRRD KLKEQFLELG NALDPNRPKS DKASVLTDTI QMLKDVMNQV DRLKAEYETL SQESRELIQE
101: KSELREEKAT LKSDIEILNA QYQHRIKTMV PWVPHYSYHI PFVAITQGQS SFIPYSASVN PLTEQQASVQ QHSSSSADAS MKQDSKIKPL DLDLMMNSNH
201: SGQGNDQKDD VRLKLELKIH ASSLAQQVSD LFNSFANKLF HGLTRVYFHA GCFWKREESK LDNHCKLIE
101: KSELREEKAT LKSDIEILNA QYQHRIKTMV PWVPHYSYHI PFVAITQGQS SFIPYSASVN PLTEQQASVQ QHSSSSADAS MKQDSKIKPL DLDLMMNSNH
201: SGQGNDQKDD VRLKLELKIH ASSLAQQVSD LFNSFANKLF HGLTRVYFHA GCFWKREESK LDNHCKLIE
Arabidopsis Description
bHLH11basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT4G36060]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.