Factsheet for Bra017745.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47051	Canola	nucleus	96.33	96.33
Bra011658.1-P	Field mustard	cytosol	27.76	80.95
AT4G36060.3	Thale cress	nucleus, plastid	58.78	50.17
KRH13089	Soybean	nucleus	42.86	37.37
KRH24147	Soybean	nucleus	41.63	37.09
KRH43415	Soybean	nucleus	41.63	36.04
Solyc01g111130.2.1	Tomato	nucleus	46.94	34.53
PGSC0003DMT400004039	Potato	nucleus	46.94	34.43
VIT_03s0038g01790.t01	Wine grape	nucleus	44.9	33.43
EES03283	Sorghum	nucleus	42.86	33.23
Zm00001d044216_P002	Maize	nucleus, plastid	41.22	31.96
TraesCS6B01G220300.1	Wheat	nucleus	35.1	28.86
TraesCS6A01G204300.1	Wheat	nucleus	37.96	28.79
Os02t0433600-01	Rice	nucleus	39.59	28.28
TraesCS6D01G185100.1	Wheat	cytosol	35.51	26.93
Bra023751.1-P	Field mustard	nucleus	16.73	26.28
Bra030459.1-P	Field mustard	nucleus	21.22	23.11
Bra029011.1-P	Field mustard	nucleus	21.63	22.27
Bra002964.1-P	Field mustard	nucleus	20.82	21.89
Bra022738.1-P	Field mustard	nucleus	20.41	21.28
Bra041033.1-P	Field mustard	nucleus	21.22	18.25
Bra014923.1-P	Field mustard	nucleus	21.22	17.93

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.4	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra017745	EnsemblPlants:Bra017745.1	EnsemblPlants:Bra017745.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4DML0	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR23042
PANTHER:PTHR23042:SF73	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002540BD6	InterPro:bHLH_dom	SEG:seg

Description

AT4G36060 (E=1e-057) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA03:+:30172753..30173849

Molecular Weight (calculated)

27401.3 Da

IEP (calculated)

6.538

GRAVY (calculated)

-0.715

Length

245 amino acids

Sequence
(BLAST)

001: MEQTKKLKTS SEFSLSDESS ASSSSIRPEK MVEVKKEPVS SLKKADRERI RRDKLNEQFL ELGNALDPNR PKSDKASILI DTIQTLKDLM TQVDRLKAEH
101: VTLSQESREL IQEKSELREE KTSLKSDIDI LNAQYQHRVR TMVPWIPHYP YPVPLVAITQ CPVSTLPFPL YGTRNPAPLP SPSSTFMPYS AEQKDDAGLE
201: LELKIHASSS GQEDVYGKEK KGNLTNTASS SNSYSSSQAV SDGVM

Best Arabidopsis Sequence Match ( AT4G36060.2 )
(BLAST)

001: MAVSCLFIVS SNYRGAEMVV EVKKEAVCSQ KAEREKLRRD KLKEQFLELG NALDPNRPKS DKASVLTDTI QMLKDVMNQV DRLKAEYETL SQESRELIQE
101: KSELREEKAT LKSDIEILNA QYQHRIKTMV PWVPHYSYHI PFVAITQGQS SFIPYSASVN PLTEQQASVQ QHSSSSADAS MKQDSKIKPL DLDLMMNSNH
201: SGQGNDQKDD VRLKLELKIH ASSLAQQDVS GKEKKVSLTT TASSSNSYSL SQAVQDSSPG TVNDMLKP

Arabidopsis Description

bHLH11basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT4G36060]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.