Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0012g01920.t01 | |
| VIT_02s0012g01930.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54680.1 | VIT_02s0012g01920.t01 | AT1G32230.1 | 19548978 |
| AT5G54680.1 | VIT_02s0012g01930.t01 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH55616 | Soybean | cytosol, nucleus, plastid | 81.43 | 81.78 |
| KRH25888 | Soybean | cytosol, nucleus, plastid | 80.17 | 80.51 |
| KRH22229 | Soybean | nucleus | 78.9 | 79.91 |
| PGSC0003DMT400049592 | Potato | nucleus | 78.48 | 79.83 |
| Solyc07g064040.2.1 | Tomato | nucleus | 77.22 | 78.54 |
| KRH27110 | Soybean | nucleus | 76.79 | 78.11 |
| AT5G54680.1 | Thale cress | nucleus | 72.57 | 73.5 |
| VIT_12s0059g02650.t01 | Wine grape | nucleus | 74.26 | 73.33 |
| Bra022738.1-P | Field mustard | nucleus | 72.15 | 72.77 |
| CDY28758 | Canola | nucleus | 72.15 | 72.77 |
| Solyc10g006510.2.1 | Tomato | nucleus | 70.89 | 72.73 |
| PGSC0003DMT400037405 | Potato | nucleus | 70.46 | 72.29 |
| CDY42475 | Canola | nucleus | 70.89 | 72.1 |
| CDY41004 | Canola | nucleus | 71.31 | 71.91 |
| Bra002964.1-P | Field mustard | nucleus | 70.46 | 71.67 |
| CDY47456 | Canola | nucleus | 69.2 | 70.39 |
| CDY43028 | Canola | nucleus | 69.2 | 68.91 |
| Bra029011.1-P | Field mustard | nucleus | 68.35 | 68.07 |
| CDY43809 | Canola | nucleus | 68.35 | 68.07 |
| CDY71937 | Canola | cytosol, nucleus | 62.45 | 67.58 |
| Bra030459.1-P | Field mustard | nucleus | 63.29 | 66.67 |
| CDY35576 | Canola | nucleus | 62.45 | 64.91 |
| VIT_00s0532g00050.t01 | Wine grape | nucleus | 64.56 | 58.17 |
| AT1G51070.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 62.45 | 50.68 |
| VIT_14s0081g00720.t01 | Wine grape | nucleus | 44.3 | 48.61 |
| VIT_05s0049g00460.t01 | Wine grape | cytosol, nucleus, plasma membrane | 43.04 | 47.0 |
| VIT_03s0038g01790.t01 | Wine grape | nucleus | 32.91 | 23.71 |
| VIT_04s0023g03430.t01 | Wine grape | nucleus | 30.8 | 22.39 |
Protein Annotations
| EntrezGene:100258884 | wikigene:100258884 | MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | ProteinID:CBI20499 |
| ProteinID:CBI20499.3 | ncoils:Coil | UniProt:E0CT50 | EMBL:FN595229 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100258884 |
| wikigene:LOC100258884 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF78 | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:TC52373 | UniParc:UPI00015C7F0F | ArrayExpress:VIT_19s0014g05100 | EnsemblPlantsGene:VIT_19s0014g05100 | EnsemblPlants:VIT_19s0014g05100.t01 |
| unigene:Vvi.1904 | RefSeq:XP_002282727 | RefSeq:XP_002282727.1 | InterPro:bHLH_dom | SEG:seg | : |
Description
No Description!
Coordinates
chr19:+:5400693..5404685
Molecular Weight (calculated)
25961.8 Da
IEP (calculated)
8.189
GRAVY (calculated)
-0.597
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSPEATNWL YEYGLIEDIP VPDSNFANTN SGFAWTPVQA LNTSANVSGE IDGSFGDSDG IKETGSKKRV RSESCGASSS KACREKLRRD RLNDKFMELG
101: SILEPGRPPK TDKSSILIDA VRMVTQLRGE SQKLKDSNSS LQEKIKELKA EKNELRDEKQ RLKAEKEKLE QQLKAMNAQP SFLPPVPSIP AAFAAQGQAG
201: GNKLVPFIGY PGVAMWQFMP PAAVDTSQDH VLRPPVA
101: SILEPGRPPK TDKSSILIDA VRMVTQLRGE SQKLKDSNSS LQEKIKELKA EKNELRDEKQ RLKAEKEKLE QQLKAMNAQP SFLPPVPSIP AAFAAQGQAG
201: GNKLVPFIGY PGVAMWQFMP PAAVDTSQDH VLRPPVA
001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
Arabidopsis Description
ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.