Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400038368 | |
| PGSC0003DMT400043197 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54680.1 | PGSC0003DMT400038368 | AT1G32230.1 | 19548978 |
| AT5G54680.1 | PGSC0003DMT400043197 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g006510.2.1 | Tomato | nucleus | 95.67 | 95.67 |
| PGSC0003DMT400049592 | Potato | nucleus | 77.49 | 76.82 |
| VIT_19s0014g05100.t01 | Wine grape | nucleus | 72.29 | 70.46 |
| KRH55616 | Soybean | cytosol, nucleus, plastid | 70.56 | 69.07 |
| KRH22229 | Soybean | nucleus | 69.7 | 68.8 |
| KRH27110 | Soybean | nucleus | 67.97 | 67.38 |
| KRH25888 | Soybean | cytosol, nucleus, plastid | 68.83 | 67.37 |
| AT5G54680.1 | Thale cress | nucleus | 67.53 | 66.67 |
| Bra022738.1-P | Field mustard | nucleus | 67.1 | 65.96 |
| CDY28758 | Canola | nucleus | 67.1 | 65.96 |
| CDY42475 | Canola | nucleus | 65.8 | 65.24 |
| Bra002964.1-P | Field mustard | nucleus | 65.8 | 65.24 |
| CDY41004 | Canola | nucleus | 66.23 | 65.11 |
| CDY47456 | Canola | nucleus | 65.37 | 64.81 |
| CDY43809 | Canola | nucleus | 64.94 | 63.03 |
| CDY43028 | Canola | nucleus | 64.5 | 62.6 |
| Bra029011.1-P | Field mustard | nucleus | 63.64 | 61.76 |
| Bra030459.1-P | Field mustard | nucleus | 59.74 | 61.33 |
| CDY71937 | Canola | cytosol, nucleus | 58.01 | 61.19 |
| CDY35576 | Canola | nucleus | 58.44 | 59.21 |
| PGSC0003DMT400055907 | Potato | nucleus | 55.84 | 56.09 |
| PGSC0003DMT400067294 | Potato | nucleus | 54.98 | 52.05 |
| AT1G51070.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 59.31 | 46.92 |
| PGSC0003DMT400044234 | Potato | nucleus | 40.69 | 41.59 |
| PGSC0003DMT400004039 | Potato | nucleus | 27.71 | 19.16 |
Protein Annotations
| EntrezGene:102584960 | MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| UniProt:M1B5C5 | PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400014432 | PGSC:PGSC0003DMG400014432 | EnsemblPlants:PGSC0003DMT400037405 | PFscan:PS50888 |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF78 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002961CA8 | RefSeq:XP_006352486.1 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
Basic helix-loop-helix protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014432]
Coordinates
chr10:-:1414083..1417899
Molecular Weight (calculated)
25783.8 Da
IEP (calculated)
7.140
GRAVY (calculated)
-0.575
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLPENTNWL YDYNYEDIVS PDVNFSVSGY SWSMQGFNGS TNASVDIDGS LGESDCLKES SCKKRTRAES CTSSSSKACR EKLRREKLND KFMELAVLLE
101: PGRPPKTDKS GILVDAVRVV TQLRDEAQKL KDSNLDLQEK IKELKVEKNE LRDEKQRLKS QKEKLEQQLK TMSAQPSFLP PAMPGAFASP IQAAGTKLVP
201: IISYPGVAMW QFMPPAAIDT SQDHVLRPPV A
101: PGRPPKTDKS GILVDAVRVV TQLRDEAQKL KDSNLDLQEK IKELKVEKNE LRDEKQRLKS QKEKLEQQLK TMSAQPSFLP PAMPGAFASP IQAAGTKLVP
201: IISYPGVAMW QFMPPAAIDT SQDHVLRPPV A
001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
Arabidopsis Description
ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.