Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014923.1-P | Field mustard | nucleus | 98.62 | 98.62 |
| CDY35510 | Canola | nucleus | 81.03 | 79.93 |
| CDY08983 | Canola | nucleus | 80.69 | 79.05 |
| CDX85069 | Canola | nucleus | 83.1 | 78.76 |
| AT3G23210.1 | Thale cress | nucleus | 70.69 | 64.06 |
| CDY49420 | Canola | nucleus | 58.62 | 60.93 |
| CDY12770 | Canola | nucleus | 58.97 | 60.21 |
| Solyc09g089870.2.1 | Tomato | nucleus | 41.38 | 53.1 |
| KRG90395 | Soybean | cytosol, mitochondrion, nucleus | 40.0 | 52.73 |
| PGSC0003DMT400044234 | Potato | nucleus | 41.03 | 52.65 |
| KRH31712 | Soybean | cytosol, mitochondrion, nucleus | 37.59 | 50.0 |
| VIT_05s0049g00460.t01 | Wine grape | cytosol, nucleus, plasma membrane | 37.24 | 49.77 |
| GSMUA_Achr10P... | Banana | cytosol | 21.38 | 42.76 |
| CDY28758 | Canola | nucleus | 33.79 | 41.7 |
| CDY41004 | Canola | nucleus | 33.45 | 41.28 |
| GSMUA_Achr7P10830_001 | Banana | cytosol, nucleus, plastid | 20.34 | 41.26 |
| CDY42475 | Canola | nucleus | 32.76 | 40.77 |
| CDY47456 | Canola | nucleus | 32.76 | 40.77 |
| CDY71937 | Canola | cytosol, nucleus | 30.34 | 40.18 |
| CDY43809 | Canola | nucleus | 32.76 | 39.92 |
| CDY43028 | Canola | nucleus | 32.41 | 39.5 |
| CDY35576 | Canola | nucleus | 30.69 | 39.04 |
| GSMUA_Achr10P... | Banana | plastid | 23.1 | 36.81 |
| Os05t0455400-01 | Rice | cytosol | 18.62 | 36.49 |
| EES18337 | Sorghum | nucleus | 28.28 | 34.02 |
| GSMUA_Achr2P16550_001 | Banana | cytosol | 26.9 | 33.91 |
| HORVU1Hr1G072810.2 | Barley | nucleus | 27.24 | 33.19 |
| TraesCS1A01G281300.1 | Wheat | cytosol, mitochondrion, nucleus | 26.9 | 32.5 |
| TraesCS1B01G290500.1 | Wheat | cytosol | 26.9 | 32.23 |
| TraesCS1D01G280600.1 | Wheat | cytosol, mitochondrion, nucleus | 26.55 | 31.95 |
| Zm00001d038357_P001 | Maize | cytosol, nucleus, plastid | 28.97 | 29.47 |
| CDX72574 | Canola | nucleus | 17.93 | 21.22 |
| CDY47051 | Canola | nucleus | 16.9 | 20.0 |
| CDY42214 | Canola | mitochondrion, nucleus | 22.41 | 19.46 |
| CDY68426 | Canola | nucleus | 16.9 | 19.29 |
| CDY33424 | Canola | nucleus | 22.41 | 17.81 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | GO:A0A078CNG5 | EnsemblPlants:CDX77539 | ProteinID:CDX77539 |
| ProteinID:CDX77539.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00128434001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF72 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF43B2 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA07g06770D
Coordinates
chrLK031811:+:1612218..1613844
Molecular Weight (calculated)
32312.8 Da
IEP (calculated)
4.582
GRAVY (calculated)
-0.742
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MYQSNEEDDD FLAALCFDQS NGGEDPYAFI QTEQGNLFPD FGSSSGVNLQ TEQEQEQVCN NNNIGAQFDS FSGNNGLGPF GGVLYSSSIV EKEQELVCCG
101: VVEINSSSSV GGVKEELEDE CSRKRGRTGP CSKPGTKACR EKKRREMLND KFMDLSSFLE PTRTPKTDKP AILDDAIRVV NQLRGEAHEL KETNQKLLEE
201: IKTLKAEKNE LREEKLVLKA DKEKMEQQLK SMAAVPSPGF MPSHPAAFHQ NKMAVYASYG YYPNMPMMPY LLPPSQRDTS QDQQNCSFAA
101: VVEINSSSSV GGVKEELEDE CSRKRGRTGP CSKPGTKACR EKKRREMLND KFMDLSSFLE PTRTPKTDKP AILDDAIRVV NQLRGEAHEL KETNQKLLEE
201: IKTLKAEKNE LREEKLVLKA DKEKMEQQLK SMAAVPSPGF MPSHPAAFHQ NKMAVYASYG YYPNMPMMPY LLPPSQRDTS QDQQNCSFAA
001: MYPSIEDDDD LLAALCFDQS NGVEDPYGYM QTNEDNIFQD FGSCGVNLMQ PQQEQFDSFN GNLEQVCSSF RGGNNGVVYS SSIGSAQLDL AASFSGVLQQ
101: ETHQVCGFRG QNDDSAVPHL QQQQGQVFSG VVEINSSSSV GAVKEEFEEE CSGKRRRTGS CSKPGTKACR EKLRREKLND KFMDLSSVLE PGRTPKTDKS
201: AILDDAIRVV NQLRGEAHEL QETNQKLLEE IKSLKADKNE LREEKLVLKA EKEKMEQQLK SMVVPSPGFM PSQHPAAFHS HKMAVAYPYG YYPPNMPMWS
301: PLPPADRDTS RDLKNLPPVA
101: ETHQVCGFRG QNDDSAVPHL QQQQGQVFSG VVEINSSSSV GAVKEEFEEE CSGKRRRTGS CSKPGTKACR EKLRREKLND KFMDLSSVLE PGRTPKTDKS
201: AILDDAIRVV NQLRGEAHEL QETNQKLLEE IKSLKADKNE LREEKLVLKA EKEKMEQQLK SMVVPSPGFM PSQHPAAFHS HKMAVAYPYG YYPPNMPMWS
301: PLPPADRDTS RDLKNLPPVA
Arabidopsis Description
BHLH34Transcription factor bHLH34 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.