Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67026 | Canola | nucleus | 95.04 | 94.0 |
| Bra023252.1-P | Field mustard | nucleus | 79.04 | 89.21 |
| CDY43007 | Canola | nucleus | 77.39 | 72.46 |
| CDY41739 | Canola | cytosol | 68.75 | 68.0 |
| AT1G32230.1 | Thale cress | nucleus | 72.79 | 67.23 |
| CDY60257 | Canola | cytosol | 40.26 | 66.97 |
| CDY31694 | Canola | nucleus | 48.53 | 50.0 |
| CDY32124 | Canola | nucleus | 48.35 | 49.62 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 44.85 | 49.49 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 38.6 | 39.4 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 42.28 | 36.92 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 38.6 | 36.02 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 38.6 | 36.02 |
| Solyc08g005270.2.1 | Tomato | nucleus | 38.97 | 35.33 |
| PGSC0003DMT400038368 | Potato | nucleus | 36.4 | 33.62 |
| PGSC0003DMT400043197 | Potato | nucleus | 34.74 | 31.82 |
| GSMUA_Achr11P... | Banana | nucleus | 29.78 | 31.15 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 23.71 | 30.79 |
| CDY51640 | Canola | cytoskeleton, cytosol, nucleus | 16.36 | 29.28 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 30.33 | 29.15 |
| CDY54287 | Canola | nucleus | 16.36 | 28.99 |
| CDY11593 | Canola | nucleus | 15.99 | 28.52 |
| CDY57852 | Canola | nucleus | 16.18 | 28.39 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 28.49 | 28.18 |
| CDY25790 | Canola | cytoskeleton, cytosol, nucleus | 15.81 | 27.65 |
| CDY44157 | Canola | cytoskeleton, cytosol, nucleus | 15.62 | 27.6 |
| TraesCS4A01G321300.1 | Wheat | nucleus | 28.86 | 27.59 |
| TraesCS5B01G557500.2 | Wheat | nucleus | 29.23 | 27.51 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 29.04 | 27.48 |
| TraesCS5D01G551800.3 | Wheat | nucleus | 28.68 | 26.99 |
| HORVU5Hr1G124010.1 | Barley | nucleus | 28.68 | 26.94 |
| Os10t0577800-01 | Rice | nucleus | 28.86 | 26.57 |
| KXG38822 | Sorghum | nucleus | 29.04 | 26.55 |
| TraesCS1D01G199200.1 | Wheat | cytosol, nucleus, plastid | 28.86 | 26.52 |
| TraesCS1A01G195400.4 | Wheat | cytosol | 28.86 | 26.52 |
| KRH74373 | Soybean | mitochondrion | 23.16 | 26.42 |
| TraesCS1B01G210300.4 | Wheat | peroxisome | 28.49 | 26.32 |
| HORVU1Hr1G050960.7 | Barley | nucleus | 28.86 | 25.78 |
| EER90487 | Sorghum | nucleus | 27.02 | 25.65 |
| Os03t0854800-03 | Rice | nucleus | 26.84 | 25.0 |
| Zm00001d030110_P001 | Maize | mitochondrion, nucleus | 27.21 | 24.83 |
| Zm00001d014423_P002 | Maize | nucleus | 27.76 | 24.63 |
| CDY70596 | Canola | cytosol | 13.6 | 24.42 |
| CDY61348 | Canola | nucleus | 13.79 | 24.12 |
| CDY00302 | Canola | nucleus | 13.79 | 23.96 |
| HORVU0Hr1G014460.1 | Barley | nucleus | 24.26 | 22.88 |
| CDY66230 | Canola | extracellular, golgi | 14.89 | 22.75 |
| CDY30723 | Canola | extracellular, golgi | 14.71 | 22.47 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 25.92 | 21.49 |
Protein Annotations
| Gene3D:3.90.228.10 | MapMan:35.1 | GO:A0A078GC27 | UniProt:A0A078GC27 | EnsemblPlants:CDY22597 | ProteinID:CDY22597 |
| ProteinID:CDY22597.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 | GO:GO:0016740 | GO:GO:0016757 |
| EnsemblPlantsGene:GSBRNA2T00019251001 | InterPro:IPR004170 | InterPro:IPR012317 | PFAM:PF00644 | PFAM:PF12174 | PFscan:PS50918 |
| PFscan:PS51059 | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF4 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | SUPFAM:SSF56399 |
| UniParc:UPI0004EF48BF | InterPro:WWE-dom | SEG:seg | : | : | : |
Description
BnaC05g24350DPoly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:A0A078GC27]
Coordinates
chrLK032133:+:573236..576522
Molecular Weight (calculated)
60993.7 Da
IEP (calculated)
6.697
GRAVY (calculated)
-0.467
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTKIVKVLD SRREDGFGKK RKRAASYAAY VTGVSYAKLQ DVPPPNPQSQ VPDKRRKLEG AYENLSGKSL VRYYSYFKKT GIAKRVMIYE KGVWNDLPDH
101: VICTIRDELN EKRAAIEFEW CGHHFLLDFL HMHRLDLETG AKTPLAWIDI GGKCFFPEIY ESDERNDCCN HKCVEYSKQY VPHDIKLRLE IDVNAGEPRL
201: NLEECSDESG DSMDDDPAED SCSRRIEPAV SKWDETDAIA VKPAGAEGLD KDAVKKMFAV GTASLGHVAV LDVGRFSSEI ADARLELFQK QVEITKKHRG
301: DANVRYAWLP AKREVLSGIM MQGLGVGGAF IRKSIYGVGI HLTAADCPYF SARYCDIDEN GVRYMVLCRV IMGNMELLRG DKAQFFSGGE EYDNGVDDVE
401: NPKNYIVWNI NMNTHIFPEF VVRFKLSVPH NAEGNMVARH DNSGVTLEGP KDLPPPQGPE RGSGSANSVG SSTTKPKSPW MPFPTLFAAI SPKIAEKDMC
501: LINADYQQLR EKKMTRGEFV RKLRGIVGDD LLRSTITALQ NQAS
101: VICTIRDELN EKRAAIEFEW CGHHFLLDFL HMHRLDLETG AKTPLAWIDI GGKCFFPEIY ESDERNDCCN HKCVEYSKQY VPHDIKLRLE IDVNAGEPRL
201: NLEECSDESG DSMDDDPAED SCSRRIEPAV SKWDETDAIA VKPAGAEGLD KDAVKKMFAV GTASLGHVAV LDVGRFSSEI ADARLELFQK QVEITKKHRG
301: DANVRYAWLP AKREVLSGIM MQGLGVGGAF IRKSIYGVGI HLTAADCPYF SARYCDIDEN GVRYMVLCRV IMGNMELLRG DKAQFFSGGE EYDNGVDDVE
401: NPKNYIVWNI NMNTHIFPEF VVRFKLSVPH NAEGNMVARH DNSGVTLEGP KDLPPPQGPE RGSGSANSVG SSTTKPKSPW MPFPTLFAAI SPKIAEKDMC
501: LINADYQQLR EKKMTRGEFV RKLRGIVGDD LLRSTITALQ NQAS
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.