CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44157	Canola	cytoskeleton, cytosol, nucleus	78.29	77.27
AT1G23550.1	Thale cress	nucleus	69.08	65.02
CDY54287	Canola	nucleus	63.49	62.87
CDY25790	Canola	cytoskeleton, cytosol, nucleus	62.5	61.09
CDY11593	Canola	nucleus	53.29	53.11
CDY57852	Canola	nucleus	51.32	50.32
VIT_01s0127g00680.t01	Wine grape	nucleus	40.13	37.54
GSMUA_Achr5P03800_001	Banana	cytosol	20.07	35.88
KRH42972	Soybean	cytosol	32.89	35.21
Solyc05g005280.2.1	Tomato	cytosol	35.2	35.2
PGSC0003DMT400035039	Potato	cytosol	34.54	35.0
Solyc05g005290.2.1	Tomato	cytosol	26.32	34.33
CDY70596	Canola	cytosol	32.89	33.0
CDY00302	Canola	nucleus	32.89	31.95
CDY61348	Canola	nucleus	32.57	31.83
GSMUA_Achr4P27510_001	Banana	cytosol	28.62	30.21
PGSC0003DMT400035056	Potato	cytosol	32.24	29.52
CDY30723	Canola	extracellular, golgi	33.22	28.37
CDY66230	Canola	extracellular, golgi	32.89	28.09
CDY60257	Canola	cytosol	26.97	25.08
CDY67026	Canola	nucleus	29.61	16.36
CDY22597	Canola	nucleus	29.28	16.36
CDX84199	Canola	cytosol, nucleus, plastid	25.0	15.42
CDY31694	Canola	nucleus	26.32	15.15
CDY43007	Canola	nucleus	27.96	14.63
CDY32124	Canola	nucleus	25.0	14.34
CDY41739	Canola	cytosol	24.67	13.64

Protein Annotations

EnsemblPlants:CDY51640	EnsemblPlantsGene:GSBRNA2T00003960001	Gene3D:3.90.228.10	GO:A0A078IKR5	GO:GO:0003674	GO:GO:0003824
GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	PANTHER:PTHR32263
PANTHER:PTHR32263:SF8	PFAM:PF12174	PFscan:PS51059	ProteinID:CDY51640	ProteinID:CDY51640.1	SUPFAM:SSF56399
UniParc:UPI0004EE245B	UniProt:A0A078IKR5	MapMan:35.1	:	:	:

Description

BnaC05g50870DBnaC05g50870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKR5]

Coordinates

chrLK033015:+:9338..10557

Molecular Weight (calculated)

33204.3 Da

IEP (calculated)

6.520

GRAVY (calculated)

-0.287

Length

304 amino acids

Sequence
(BLAST)

001: MAAQVEIEDQ SSVTELDNGE IFDPLSDDAD SSSGSTILLG QGNQEHDVIK ACFLSGLGAA FAGDTTVASV RKNSTEGMAT RARYVAFRIF TEAMARKNGG
101: DPNVKYGWYA GSREEIEGIV SYGFSSREID DGSHGIGIHL VASKCSLFAA VGAEPDGEGV RHLILCRVLL GKPEQIASGS KQSHPSSSEF DSGVDDLQNP
201: SKYVVWSSNM NSYILPSYIL SFRSPRLRVI GRGGPPPSSP WVSFTALISM LSKSVDASRM SLIMRTYDDF RKRKIQRDQL VRMMRQVAGD DLLAQIIRNH
301: RDRV

Best Arabidopsis Sequence Match ( AT1G23550.1 )
(BLAST)

001: MAAQVEIEDQ TSVTNLDNGE IFDSISDDAD SSVSHAGSSF SSSSLILLGE GNPEHDVIKT CLLSGMGVVS SDTTIVTISK NSSERGITTR AKFLAFRIFT
101: DAVARKHGGD ANVKYGWYAG SRDEIQRIIS YGFSNRDVGK FENDGGSHGI GIHLVPSKCS LLAASATEQD EEGLRYLLLC RVILGKPEII ISGSKQSYPS
201: SAEFDSGVDD LHNPRNYVIW SCNMNSCILP SYIVSFRSPR LRVSRGGFAS RPSSPWVSFA SLMSMLSTSM DPSRMNLIIR TYDDFRKRKI RRDQLVRKMR
301: EVAGDNLLAE IIKNHKNRNK VTN

Arabidopsis Description

SRO2Probable inactive poly [ADP-ribose] polymerase SRO2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.