Factsheet for VIT_01s0127g00680.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005290.2.1	Tomato	cytosol	35.08	48.93
PGSC0003DMT400035039	Potato	cytosol	42.77	46.33
Solyc05g005280.2.1	Tomato	cytosol	41.23	44.08
VIT_17s0000g08370.t01	Wine grape	nucleus	43.69	41.28
KRH42972	Soybean	cytosol	36.0	41.2
CDY51640	Canola	cytoskeleton, cytosol, nucleus	37.54	40.13
AT1G23550.1	Thale cress	nucleus	39.69	39.94
PGSC0003DMT400035056	Potato	cytosol	40.62	39.76
GSMUA_Achr5P03800_001	Banana	cytosol	20.62	39.41
CDY44157	Canola	cytoskeleton, cytosol, nucleus	37.23	39.29
Bra024609.1-P	Field mustard	cytoskeleton, cytosol, nucleus	37.23	39.29
CDY54287	Canola	nucleus	36.31	38.44
CDY25790	Canola	cytoskeleton, cytosol, nucleus	35.08	36.66
Bra016219.1-P	Field mustard	nucleus	34.15	36.51
Bra012380.1-P	Field mustard	cytosol	34.46	36.13
GSMUA_Achr4P27510_001	Banana	cytosol	31.69	35.76
CDY57852	Canola	nucleus	33.85	35.48
CDY11593	Canola	nucleus	32.92	35.08
AT1G70440.1	Thale cress	cytoskeleton, cytosol, nucleus	32.0	34.1
VIT_02s0012g01920.t01	Wine grape	cytosol	31.08	18.95
VIT_02s0012g01930.t01	Wine grape	nucleus	32.62	17.01
VIT_18s0001g08290.t01	Wine grape	plastid	24.62	16.49

Protein Annotations

EntrezGene:100852765	wikigene:100852765	Gene3D:3.90.228.10	MapMan:35.1	ProteinID:CCB51780	ProteinID:CCB51780.1
UniProt:F6HHU3	EMBL:FN595761	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950	GO:GO:0016740
GO:GO:0016757	InterPro:IPR012317	EntrezGene:LOC100852765	wikigene:LOC100852765	PFAM:PF00644	PFAM:PF12174
PFscan:PS51059	PANTHER:PTHR32263	PANTHER:PTHR32263:SF8	InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	SUPFAM:SSF56399
TIGR:TC57146	TIGR:TC60269	UniParc:UPI00019829F6	ArrayExpress:VIT_01s0127g00680	EnsemblPlantsGene:VIT_01s0127g00680	EnsemblPlants:VIT_01s0127g00680.t01
unigene:Vvi.613	RefSeq:XP_003631261	RefSeq:XP_003631261.1	SEG:seg	:	:

Description

Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:F6HHU3]

Coordinates

chr1:+:8010306..8012678

Molecular Weight (calculated)

36667.0 Da

IEP (calculated)

8.981

GRAVY (calculated)

-0.321

Length

325 amino acids

Sequence
(BLAST)

001: MERVGAEEQV SMTVDDLEII RPEAESDEFS SSSERVDLFA WNNGMIRVDE GNTEHDAIKK MFFSGMGPIG KGTDVVSIHK NSHSTLTGQA RFESFRIFSQ
101: AVGKKCGGDA NINYAWYGAS RGEIYDIISH GFSRLQRPKA GELYGFGVYL SSAKFSIDCA LSSAEDENGL RHVMLCRVIL GNMETVCAGS QQFHPCSREY
201: DSGVDDVSAP RRYIIWSAYM NSHILPSYII SFRAPLKGVP RRIQANLVKP TSPWMKFHTL LSVLSKVLPP HKMTQISKYH CDFHRKKITR QQLVKRLRQI
301: AGDEMLTRVI KLYRTKDQTS CVLVP

Best Arabidopsis Sequence Match ( AT1G23550.1 )
(BLAST)

001: MAAQVEIEDQ TSVTNLDNGE IFDSISDDAD SSVSHAGSSF SSSSLILLGE GNPEHDVIKT CLLSGMGVVS SDTTIVTISK NSSERGITTR AKFLAFRIFT
101: DAVARKHGGD ANVKYGWYAG SRDEIQRIIS YGFSNRDVGK FENDGGSHGI GIHLVPSKCS LLAASATEQD EEGLRYLLLC RVILGKPEII ISGSKQSYPS
201: SAEFDSGVDD LHNPRNYVIW SCNMNSCILP SYIVSFRSPR LRVSRGGFAS RPSSPWVSFA SLMSMLSTSM DPSRMNLIIR TYDDFRKRKI RRDQLVRKMR
301: EVAGDNLLAE IIKNHKNRNK VTN

Arabidopsis Description

SRO2Probable inactive poly [ADP-ribose] polymerase SRO2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.