Factsheet for Solyc05g005290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035039	Potato	cytosol	70.39	54.67
Solyc05g005280.2.1	Tomato	cytosol	68.67	52.63
VIT_01s0127g00680.t01	Wine grape	nucleus	48.93	35.08
KRH42972	Soybean	cytosol	35.19	28.87
AT1G23550.1	Thale cress	nucleus	38.63	27.86
CDY54287	Canola	nucleus	34.76	26.38
CDY51640	Canola	cytoskeleton, cytosol, nucleus	34.33	26.32
Bra016219.1-P	Field mustard	nucleus	33.91	25.99
Bra024609.1-P	Field mustard	cytoskeleton, cytosol, nucleus	34.33	25.97
CDY44157	Canola	cytoskeleton, cytosol, nucleus	34.33	25.97
CDY11593	Canola	nucleus	33.91	25.9
AT1G70440.1	Thale cress	cytoskeleton, cytosol, nucleus	33.91	25.9
CDY25790	Canola	cytoskeleton, cytosol, nucleus	34.33	25.72
CDY57852	Canola	nucleus	33.91	25.48
Bra012380.1-P	Field mustard	cytosol	33.48	25.16
GSMUA_Achr4P27510_001	Banana	cytosol	29.18	23.61
Solyc03g114360.2.1	Tomato	nucleus	36.91	22.93
GSMUA_Achr5P03800_001	Banana	cytosol	15.02	20.59
Solyc04g077070.1.1	Tomato	cytosol, extracellular, nucleus, plastid	18.45	19.91
Solyc01g057360.1.1	Tomato	cytosol	21.46	16.23
Solyc01g057370.1.1	Tomato	nucleus	20.17	14.92
Solyc04g077080.1.1	Tomato	cytosol	22.32	14.17
Solyc04g077090.1.1	Tomato	cytosol	24.89	13.09
Solyc04g077100.2.1	Tomato	plastid	21.46	11.52
Solyc08g076420.2.1	Tomato	nucleus	27.9	10.89
Solyc08g005270.2.1	Tomato	nucleus	27.9	10.83
Solyc06g066330.2.1	Tomato	nucleus	26.61	10.44

Protein Annotations

EnsemblPlants:Solyc05g005290.2.1	EnsemblPlantsGene:Solyc05g005290.2	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950
GO:GO:0016740	GO:GO:0016757	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	PANTHER:PTHR32263	PANTHER:PTHR32263:SF8
PFAM:PF00644	PFscan:PS51059	SUPFAM:SSF56399	UniParc:UPI0002766C42	UniProt:K4BW60	MapMan:35.1

Description

Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:K4BW60]

Coordinates

chr5:-:232495..233667

Molecular Weight (calculated)

26288.6 Da

IEP (calculated)

7.204

GRAVY (calculated)

-0.248

Length

233 amino acids

Sequence
(BLAST)

001: MTIDDEKMLL SFDSQVESPS STYHDSLRSF KKNGMIELEE RNKEHDLIKA GFLSGMGQLG KEVEVVAIHK NSCSTILGQA RLESFRIYSE AMRKKCGGNA
101: NIKYAWFGSS KDEICNIISH GFSTITEPKS GECFGMGVHL YPANIHGVLS ALEDENGLRH MLLCRVILGN TEIIEASSKQ FQPTCQDFDS GVDNYLAPKT
201: YIIWPSYMNS HILPNFLVLL RKSRRFLQNR ILV

Best Arabidopsis Sequence Match ( AT1G23550.1 )
(BLAST)

001: MAAQVEIEDQ TSVTNLDNGE IFDSISDDAD SSVSHAGSSF SSSSLILLGE GNPEHDVIKT CLLSGMGVVS SDTTIVTISK NSSERGITTR AKFLAFRIFT
101: DAVARKHGGD ANVKYGWYAG SRDEIQRIIS YGFSNRDVGK FENDGGSHGI GIHLVPSKCS LLAASATEQD EEGLRYLLLC RVILGKPEII ISGSKQSYPS
201: SAEFDSGVDD LHNPRNYVIW SCNMNSCILP SYIVSFRSPR LRVSRGGFAS RPSSPWVSFA SLMSMLSTSM DPSRMNLIIR TYDDFRKRKI RRDQLVRKMR
301: EVAGDNLLAE IIKNHKNRNK VTN

Arabidopsis Description

SRO2Probable inactive poly [ADP-ribose] polymerase SRO2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.