Factsheet for Solyc01g057360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077070.1.1	Tomato	cytosol, extracellular, nucleus, plastid	60.39	86.11
PGSC0003DMT400093081	Potato	nucleus	31.82	51.85
Solyc01g057370.1.1	Tomato	nucleus	30.52	29.84
Solyc04g077080.1.1	Tomato	cytosol	31.82	26.7
Solyc04g077090.1.1	Tomato	cytosol	38.31	26.64
Solyc04g077100.2.1	Tomato	plastid	34.42	24.42
Solyc05g005290.2.1	Tomato	cytosol	16.23	21.46
Solyc05g005280.2.1	Tomato	cytosol	21.1	21.38
VIT_18s0001g08290.t01	Wine grape	plastid	30.52	19.38
GSMUA_Achr5P08960_001	Banana	mitochondrion, nucleus	29.22	18.87
GSMUA_Achr7P27570_001	Banana	cytosol, nucleus, plastid	23.05	18.59
TraesCS4D01G236400.2	Wheat	nucleus	26.3	18.45
TraesCS4B01G235000.1	Wheat	nucleus	25.97	18.22
TraesCS4A01G059400.1	Wheat	nucleus	25.32	17.77
Zm00001d028307_P001	Maize	nucleus	24.03	17.17
Os03t0230300-01	Rice	nucleus	25.32	16.85
Zm00001d047993_P001	Maize	cytosol, nucleus, plastid	24.35	16.74
EER92605	Sorghum	nucleus	24.03	16.48
Solyc03g114360.2.1	Tomato	nucleus	19.16	15.73
HORVU4Hr1G065800.1	Barley	nucleus, plastid	25.0	14.89
Solyc08g005270.2.1	Tomato	nucleus	24.68	12.67
Solyc08g076420.2.1	Tomato	nucleus	24.03	12.4
Solyc06g066330.2.1	Tomato	nucleus	20.45	10.61

Protein Annotations

EnsemblPlants:Solyc01g057360.1.1	EnsemblPlantsGene:Solyc01g057360.1	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950
GO:GO:0016740	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	PANTHER:PTHR32263	PANTHER:PTHR32263:SF5	PFscan:PS51059
SEG:seg	SUPFAM:SSF56399	UniParc:UPI0002761B22	UniProt:K4AVU7	MapMan:35.1	:

Description

No Description!

Coordinates

chr1:-:60773454..60774682

Molecular Weight (calculated)

35007.1 Da

IEP (calculated)

7.941

GRAVY (calculated)

-0.369

Length

308 amino acids

Sequence
(BLAST)

001: MGSSNNVDES QNLSLENSNE SDSLSRIFMA KPNELVPPKW AGTKLLSEEG RIYQKIKDGL PPIMTNRVTI TAIHLCKRRV PVEESRFEVY LENVKKVTRA
101: RGRRVDSSGW YGTSAKNVDS LMRRGFEMNS IMPASYPHGV GLYLSHFLSP QISDMMSDID ENGEKHIVLC QFILGNSEKV KLGSKQLFPS SADFDTGVDD
201: LTNPKVYVVW CGNMNTHILP RYIISYKPIH HHMYLGRLTC GGHADNTWTR LLFKLHNFLT ISQRLELRKL CMSYGDGTPV EEETFMRDLR SIVRDDQLIG
301: SIMLEISS

Best Arabidopsis Sequence Match ( AT1G70440.1 )
(BLAST)

001: MAAQVEIEDQ ESVTNLDNGE IINPISDNAP NFSGDATILL REATFEHNLI KNCFLSGMGS FATETTIVTV RKILTQRLIT TKAKFAVFKL FTEAMKRKNN
101: GYANIRYGWY SGSKEEIDRV ITYGFSNREI KKVENDVGSH GVGIHLVHHR YSLAAALVGE GDEEGIKNIL LCRVILGKPE QIVTGSKQSY PSSNQFDSGV
201: DNLENPRKYV IWSCNMNSYI LPTYIVSFKS HLLRGLIGRA RSPCVSFSVL MSILSKSLDA ARMNLILTSY DDFRKRKLRR EQLVRKIREV VGDNLLFKIL
301: KNQRR

Arabidopsis Description

SRO3Probable inactive poly [ADP-ribose] polymerase SRO3 [Source:UniProtKB/Swiss-Prot;Acc:O64592]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.