Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92605 | Sorghum | nucleus | 70.3 | 67.48 |
| Zm00001d047993_P001 | Maize | cytosol, nucleus, plastid | 67.05 | 64.51 |
| TraesCS4B01G235000.1 | Wheat | nucleus | 58.7 | 57.63 |
| TraesCS4D01G236400.2 | Wheat | nucleus | 57.54 | 56.49 |
| TraesCS4A01G059400.1 | Wheat | nucleus | 56.84 | 55.81 |
| Os03t0230300-01 | Rice | nucleus | 53.83 | 50.11 |
| HORVU4Hr1G065800.1 | Barley | nucleus, plastid | 51.74 | 43.13 |
| GSMUA_Achr7P27570_001 | Banana | cytosol, nucleus, plastid | 28.31 | 31.94 |
| GSMUA_Achr5P08960_001 | Banana | mitochondrion, nucleus | 35.03 | 31.66 |
| Solyc01g057370.1.1 | Tomato | nucleus | 20.88 | 28.57 |
| Solyc04g077080.1.1 | Tomato | cytosol | 22.97 | 26.98 |
| Solyc04g077070.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 12.99 | 25.93 |
| VIT_18s0001g08290.t01 | Wine grape | plastid | 28.31 | 25.15 |
| PGSC0003DMT400012725 | Potato | cytosol | 23.9 | 24.7 |
| Solyc01g057360.1.1 | Tomato | cytosol | 17.17 | 24.03 |
| Solyc04g077090.1.1 | Tomato | cytosol | 24.59 | 23.93 |
| Solyc04g077100.2.1 | Tomato | plastid | 22.74 | 22.58 |
| PGSC0003DMT400012724 | Potato | cytosol, nucleus, plastid | 26.45 | 22.35 |
| PGSC0003DMT400093081 | Potato | nucleus | 8.82 | 20.11 |
| Zm00001d030110_P001 | Maize | mitochondrion, nucleus | 26.68 | 19.3 |
| Zm00001d014423_P002 | Maize | nucleus | 25.99 | 18.27 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 25.29 | 16.62 |
| Zm00001d052295_P024 | Maize | cytosol | 25.99 | 11.89 |
Protein Annotations
| EntrezGene:103633148 | Gene3D:3.90.228.10 | MapMan:35.1 | UniProt:A0A1D6JUA6 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003950 | GO:GO:0016740 | InterPro:IPR012317 | InterPro:IPR016126 | ProteinID:ONL95402.1 | PFAM:PF12174 |
| PFscan:PS51059 | PFscan:PS51311 | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF5 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST |
| SUPFAM:SSF56399 | InterPro:Secretoglobin | UniParc:UPI000221A883 | EnsemblPlantsGene:Zm00001d028307 | EnsemblPlants:Zm00001d028307_P001 | EnsemblPlants:Zm00001d028307_T001 |
| SEG:seg | : | : | : | : | : |
Description
Probable inactive poly [ADP-ribose] polymerase SRO1
Coordinates
chr1:-:29957661..29960895
Molecular Weight (calculated)
48092.2 Da
IEP (calculated)
8.234
GRAVY (calculated)
-0.465
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSSDDVKA ANMRPAVAAA DGTSTLLRGW REFMRSGAPA RFLCYEDGKW IGITGEAVPQ LRQAFQERRA MADASYGGKA YLFDFLRMIR IDEVTGEETG
101: LAWIDDRGDC FFPAPDCGGR KRKRDDEPAE DEAESSSGVD VRSGERHGVD AKKMKAWENA AVRLEENDMY YQVVSKLFLS YGMAQRGAAI TEVRKIAPGA
201: RTVAFREQGQ RLAYARCTAT GTAKFAWYGA SEDDVAAVVE RGFVRNNAPR LGARKHGDGV HLSPAQCPYT SAMLAKADGS DEAHIVLCRV LMGRPEAVPA
301: GSSQFCPSSR SYDSAVDKLE NPQWYVVWNM DMNTRILPEY VVSFKCSKLQ QMRESSEATS KLKKPAPVAR DMFPTLLAEI QQIVPDKCDL LQESYKNFKM
401: GQIKKDQFIQ FLRNYVGDEV LKTVAKKLRR C
101: LAWIDDRGDC FFPAPDCGGR KRKRDDEPAE DEAESSSGVD VRSGERHGVD AKKMKAWENA AVRLEENDMY YQVVSKLFLS YGMAQRGAAI TEVRKIAPGA
201: RTVAFREQGQ RLAYARCTAT GTAKFAWYGA SEDDVAAVVE RGFVRNNAPR LGARKHGDGV HLSPAQCPYT SAMLAKADGS DEAHIVLCRV LMGRPEAVPA
301: GSSQFCPSSR SYDSAVDKLE NPQWYVVWNM DMNTRILPEY VVSFKCSKLQ QMRESSEATS KLKKPAPVAR DMFPTLLAEI QQIVPDKCDL LQESYKNFKM
401: GQIKKDQFIQ FLRNYVGDEV LKTVAKKLRR C
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.