Factsheet for PGSC0003DMT400093081

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077070.1.1	Tomato	cytosol, extracellular, nucleus, plastid	52.91	46.3
Solyc01g057360.1.1	Tomato	cytosol	51.85	31.82
PGSC0003DMT400012725	Potato	cytosol	43.39	19.66
PGSC0003DMT400012724	Potato	cytosol, nucleus, plastid	45.5	16.86
VIT_18s0001g08290.t01	Wine grape	plastid	33.86	13.2
GSMUA_Achr7P27570_001	Banana	cytosol, nucleus, plastid	24.87	12.3
PGSC0003DMT400035039	Potato	cytosol	17.99	11.33
TraesCS4D01G236400.2	Wheat	nucleus	25.93	11.16
TraesCS4B01G235000.1	Wheat	nucleus	25.93	11.16
TraesCS4A01G059400.1	Wheat	nucleus	25.93	11.16
GSMUA_Achr5P08960_001	Banana	mitochondrion, nucleus	28.04	11.11
Os03t0230300-01	Rice	nucleus	23.81	9.72
HORVU4Hr1G065800.1	Barley	nucleus, plastid	26.45	9.67
PGSC0003DMT400035056	Potato	cytosol	16.4	9.34
PGSC0003DMT400063250	Potato	nucleus	18.52	9.31
Zm00001d028307_P001	Maize	nucleus	20.11	8.82
EER92605	Sorghum	nucleus	20.63	8.69
Zm00001d047993_P001	Maize	cytosol, nucleus, plastid	20.11	8.48
PGSC0003DMT400038368	Potato	nucleus	19.58	6.28
PGSC0003DMT400043197	Potato	nucleus	15.87	5.05

Protein Annotations

EnsemblPlants:PGSC0003DMT400093081	EnsemblPlantsGene:PGSC0003DMG400042652	EntrezGene:107062448	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0003950	GO:GO:0016740	InterPro:IPR012317	InterPro:Poly(ADP-ribose)pol_cat_dom	PANTHER:PTHR32263	PANTHER:PTHR32263:SF5
PFAM:PF00644	PGSC:PGSC0003DMG400042652	RefSeq:XP_015168588.1	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0002958371
UniProt:M1DR78	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400042652]

Coordinates

chr4:+:66087405..66088060

Molecular Weight (calculated)

21357.4 Da

IEP (calculated)

5.382

GRAVY (calculated)

-0.574

Length

189 amino acids

Sequence
(BLAST)

001: MMISGSGNDV EESQNLSSES EKGNEESGSS SRIVVGTPTP KWAGTRLMRE EENVYQKLKG LLPSIMRDRV IITAMHQCMR RGPMEKERFE VYQENLEKVT
101: RARGNRRVDD SAWCGTSAKN LDSLACRGFE MNSNVPASYP HGVGIYLSPF LSPQISDMMS DIDENGEKHI ILCRAILGNF EKVELWWSY

Best Arabidopsis Sequence Match ( AT1G32230.3 )
(BLAST)

001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR

Arabidopsis Description

RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.