Factsheet for PGSC0003DMT400012724

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077100.2.1	Tomato	plastid	65.1	76.5
PGSC0003DMT400093081	Potato	nucleus	16.86	45.5
PGSC0003DMT400012725	Potato	cytosol	37.06	45.32
VIT_18s0001g08290.t01	Wine grape	plastid	30.39	31.96
GSMUA_Achr7P27570_001	Banana	cytosol, nucleus, plastid	22.94	30.63
GSMUA_Achr5P08960_001	Banana	mitochondrion, nucleus	27.65	29.56
TraesCS4D01G236400.2	Wheat	nucleus	24.31	28.25
TraesCS4A01G059400.1	Wheat	nucleus	24.31	28.25
TraesCS4B01G235000.1	Wheat	nucleus	23.92	27.79
EER92605	Sorghum	nucleus	24.31	27.62
Zm00001d028307_P001	Maize	nucleus	22.35	26.45
Zm00001d047993_P001	Maize	cytosol, nucleus, plastid	22.94	26.12
Os03t0230300-01	Rice	nucleus	23.14	25.49
PGSC0003DMT400035039	Potato	cytosol	14.31	24.33
HORVU4Hr1G065800.1	Barley	nucleus, plastid	23.92	23.6
PGSC0003DMT400035056	Potato	cytosol	13.33	20.48
PGSC0003DMT400063250	Potato	nucleus	15.1	20.48
PGSC0003DMT400038368	Potato	nucleus	20.98	18.17
PGSC0003DMT400043197	Potato	nucleus	20.39	17.51

Protein Annotations

EntrezGene:102598308	Gene3D:3.90.228.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003950
GO:GO:0016740	GO:GO:0016757	InterPro:IPR012317	UniProt:M1A1N8	PFAM:PF00644	PFAM:PF12174
EnsemblPlantsGene:PGSC0003DMG400004959	PGSC:PGSC0003DMG400004959	EnsemblPlants:PGSC0003DMT400012724	PFscan:PS51059	PANTHER:PTHR32263	PANTHER:PTHR32263:SF5
InterPro:Poly(ADP-ribose)pol_cat_dom	InterPro:RST	SUPFAM:SSF56399	UniParc:UPI000296435B	RefSeq:XP_006356803.1	SEG:seg

Description

Poly(ADP-ribose) polymerase, catalytic region [Source:PGSC_GENE;Acc:PGSC0003DMG400004959]

Coordinates

chr4:+:66111331..66113669

Molecular Weight (calculated)

57091.7 Da

IEP (calculated)

6.336

GRAVY (calculated)

-0.234

Length

510 amino acids

Sequence
(BLAST)

001: MSIASVGSCA PMIAGDEVDS ISAVFNGNKV EIVIPFERAA GGSGDDGVYE TKVRVEVPIP RNWLIPSARS TDHSQLLVQN HRNFKESGMP VRFMVFKDGS
101: WVDFEKKAMD VLVSAFVSGE AMVEMEMEGC KLIFDFYRMI GINLDSGNEL PIAWIDVGGK GFYPKVFIEG SENLDKNEVN VDEKFSSENR KIELEIKIIE
201: RNSAGDELGK RKRESEEKEV VREVGSSSRN VIEQRVVSAP TELLPPKWPR TRSLGNEEEN YRKVRGLLFS VLKADVTVTA VHQCTRTGPV EQARFEVFRN
301: NVQIVKRARG DARVGYAWYG TSLAKMDSIM WRGFQMQRIV PGYHTHGVGI YLSPLCSPQN SEMMCEIDEN GEKHIMLCRV ILGKLEKVEL GSQQLFPSSA
401: DFDTGVDDLI NPKLHVVWCS NMNTHILPLF IVSYKSGFHM SGRLNGGAHA HSALILLKLQ SSLPPPKILE FQSLYSSYQE GKVGKEIFMT QLRSLVGEDL
501: LHSIIQEVHG

Best Arabidopsis Sequence Match ( AT1G32230.1 )
(BLAST)

001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL

Arabidopsis Description

RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.